Difference between revisions of "HEMAT2 manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == * direction: ** REVERSIBLE * common name: ** Thymidine phosphorylase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/KAS15 KAS15] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-ketoacyl-ACP synthase (2) * Sy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/KAS15 KAS15] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Thymidine phosphorylase
+
** Beta-ketoacyl-ACP synthase (2)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[thymd]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[thym]][c]
+
** 1.0 [[malACP]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[accoa]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[coa]][c] '''+''' 1.0 [[actACP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Thymidine C10H14N2O5[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Thymine C5H6N2O2[c]
+
** 1.0 Malonyl-[acyl-carrier protein][c] '''+''' 1.0 H+[c] '''+''' 1.0 Acetyl-CoA[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Coenzyme A[c] '''+''' 1.0 Acetoacetyl-ACP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0173]]
+
* [[EF2885]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
+
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
−
** '''82''' reactions found over '''244''' reactions in the full pathway
+
** '''36''' reactions found over '''182''' reactions in the full pathway
−
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
+
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
−
** '''22''' reactions found over '''72''' reactions in the full pathway
+
** '''65''' reactions found over '''160''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* BioCyc : META:2.3.1.180-RXN
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037]
+
* MetaNetX (MNX) Equation : MNXR100913
−
* BioCyc : META:THYM-PHOSPH-RXN
+
* KEGG Reaction : R10707
−
* MetaNetX (MNX) Equation : MNXR104887
+
* EC Number : 2.3.1.180
−
* KEGG Reaction : R01570
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* EC Number : 2.4.2.2
+
{{#set: common name=Beta-ketoacyl-ACP synthase (2)}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: gene associated=EF2885}}
−
{{#set: common name=Thymidine phosphorylase}}
+
{{#set: in pathway=map01100|map01212|map00061}}
−
{{#set: gene associated=EF0173}}
+
−
{{#set: in pathway=map01100|map00240|map00983}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 19:43, 18 March 2018

Reaction KAS15

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Beta-ketoacyl-ACP synthase (2)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Malonyl-[acyl-carrier protein][c] + 1.0 H+[c] + 1.0 Acetyl-CoA[c] => 1.0 CO2 CO2[c] + 1.0 Coenzyme A[c] + 1.0 Acetoacetyl-ACP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:2.3.1.180-RXN
  • MetaNetX (MNX) Equation : MNXR100913
  • KEGG Reaction : R10707
  • EC Number : 2.3.1.180




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