Difference between revisions of "HEMAT2 manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == * direction: ** REVERSIBLE * common name: ** Thymidine phosphorylase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HEMAT2_manual HEMAT2_manual] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula ==...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/HEMAT2_manual HEMAT2_manual] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** Thymidine phosphorylase
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[thymd]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[thym]][c]
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** 1.0 [[hx2coa]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c] '''=>''' 1.0 [[hexACP]][c] '''+''' 1.0 [[nad]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Thymidine C10H14N2O5[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Thymine C5H6N2O2[c]
+
** 1.0 Trans-Hex-2-enoyl-CoA[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''=>''' 1.0 Hexanoyl-ACP (n-C6:0ACP)[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0173]]
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* Gene: [[EF0282]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-4_newreactions]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''82''' reactions found over '''244''' reactions in the full pathway
 
−
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
 
−
** '''22''' reactions found over '''72''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
−
** [[pantograph]]:
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** Source: [[manual-4_newreactions]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[manual curation]]
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*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037]
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{{#set: gene associated=EF0282}}
−
* BioCyc : META:THYM-PHOSPH-RXN
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{{#set: in pathway=}}
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* MetaNetX (MNX) Equation : MNXR104887
+
{{#set: reconstruction category=manual}}
−
* KEGG Reaction : R01570
+
{{#set: reconstruction source=manual-4_newreactions}}
−
* EC Number : 2.4.2.2
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{{#set: reconstruction comment=manual curation}}
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Thymidine phosphorylase}}
+
−
{{#set: gene associated=EF0173}}
+
−
{{#set: in pathway=map01100|map00240|map00983}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
+

Latest revision as of 15:38, 21 March 2018

Reaction HEMAT2_manual

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Trans-Hex-2-enoyl-CoA[c] + 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] => 1.0 Hexanoyl-ACP (n-C6:0ACP)[c] + 1.0 Nicotinamide adenine dinucleotide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=HEMAT2_manual&oldid=10929"