Difference between revisions of "HEMAT2 manual"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SO4t2 SO4t2] == * direction: ** LEFT-TO-RIGHT * common name: ** Sulfate transport in via proton sym...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == * direction: ** REVERSIBLE * common name: ** Thymidine phosphorylase * Synonym(s):...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == |
* direction: | * direction: | ||
| − | ** | + | ** REVERSIBLE |
* common name: | * common name: | ||
| − | ** | + | ** Thymidine phosphorylase |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[thymd]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[thym]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 Thymidine C10H14N2O5[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Thymine C5H6N2O2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * [[EF0173]] |
| − | ** [[pantograph]]-[[ | + | ** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] |
| − | + | ||
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240] | ||
| + | ** '''82''' reactions found over '''244''' reactions in the full pathway | ||
| + | * [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983] | ||
| + | ** '''22''' reactions found over '''72''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* [[orthology]]: | * [[orthology]]: | ||
** [[pantograph]]: | ** [[pantograph]]: | ||
| + | *** [[e_coli_sstr_k12_substr_mg1655]] | ||
*** [[b_subtilis_subsp_subtilis_str168]] | *** [[b_subtilis_subsp_subtilis_str168]] | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037] |
| − | * MetaNetX (MNX) Equation : | + | * BioCyc : META:THYM-PHOSPH-RXN |
| − | {{#set: direction= | + | * MetaNetX (MNX) Equation : MNXR104887 |
| − | {{#set: common name= | + | * KEGG Reaction : R01570 |
| − | {{#set: gene associated= | + | * EC Number : 2.4.2.2 |
| − | {{#set: in pathway=}} | + | {{#set: direction=REVERSIBLE}} |
| + | {{#set: common name=Thymidine phosphorylase}} | ||
| + | {{#set: gene associated=EF0173}} | ||
| + | {{#set: in pathway=map01100|map00240|map00983}} | ||
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
| − | {{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}} | + | {{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}} |
Revision as of 16:13, 10 January 2018
Contents
Reaction TMDPP
- direction:
- REVERSIBLE
- common name:
- Thymidine phosphorylase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Thymidine C10H14N2O5[c] + 1.0 Phosphate[c] <=> 1.0 2-Deoxy-D-ribose 1-phosphate[c] + 1.0 Thymine C5H6N2O2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00240: map00240
- 82 reactions found over 244 reactions in the full pathway
- map00983: map00983
- 22 reactions found over 72 reactions in the full pathway
Reconstruction information
External links
- RHEA:
- BioCyc : META:THYM-PHOSPH-RXN
- MetaNetX (MNX) Equation : MNXR104887
- KEGG Reaction : R01570
- EC Number : 2.4.2.2
