Difference between revisions of "WCOS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ASPTA ASPTA] == * direction: ** REVERSIBLE * common name: ** Aspartate transaminase * Synonym(s):...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] == * common_name: ** Pyruvate metabolism * Synonym(s): == Reaction(s) found == * '...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ASPTA ASPTA] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] ==
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* direction:
+
* common_name:
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** REVERSIBLE
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** Pyruvate metabolism
−
* common name:
+
−
** Aspartate transaminase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
* '''31''' reaction(s) found
−
** 1.0 [[asp__L]][c] '''+''' 1.0 [[akg]][c] '''<=>''' 1.0 [[oaa]][c] '''+''' 1.0 [[glu__L]][c]
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** [[L_LACD2]]
−
* With common name(s):
+
** [[LALDO2x]]
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** 1.0 L-Aspartate[c] '''+''' 1.0 2-Oxoglutarate[c] '''<=>''' 1.0 Oxaloacetate[c] '''+''' 1.0 L-Glutamate[c]
+
** [[L_LACD3]]
−
 
+
** [[ACKr]]
−
== Genes associated with this reaction  ==
+
** [[PTAr]]
−
Genes have been associated with this reaction based on different elements listed below.
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** [[PFL]]
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* [[EF2372]]
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** [[GLYALDDr]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[ABUTD]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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** [[ME1]]
−
== Pathways  ==
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** [[ME2]]
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** [[ACYP_2]]
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** '''508''' reactions found over '''2349''' reactions in the full pathway
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** [[MDH]]
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* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
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** [[LCADi]]
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** '''12''' reactions found over '''65''' reactions in the full pathway
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** [[OAADC]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** [[ACALD]]
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** '''218''' reactions found over '''1054''' reactions in the full pathway
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** [[OBTFL]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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** [[PPS]]
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** '''83''' reactions found over '''228''' reactions in the full pathway
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** [[PC]]
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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** [[2HBO]]
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** '''111''' reactions found over '''715''' reactions in the full pathway
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** [[IPPS]]
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* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
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** [[ALDD2y]]
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** '''25''' reactions found over '''80''' reactions in the full pathway
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** [[ALDD2x]]
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* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
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** [[PDH]]
−
** '''25''' reactions found over '''135''' reactions in the full pathway
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** [[ACCOAC]]
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* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
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** [[ACACT1r]]
−
** '''50''' reactions found over '''220''' reactions in the full pathway
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** [[PTA2]]
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
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** [[PYK]]
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** '''24''' reactions found over '''149''' reactions in the full pathway
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** [[LDH_D]]
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* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
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** [[GLYCLTDy]]
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** '''16''' reactions found over '''71''' reactions in the full pathway
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** [[GLYCLTDx]]
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* [[map00950]]: [http://www.genome.jp/dbget-bin/www_bget?map00950 map00950]
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** [[LDH_L]]
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** '''3''' reactions found over '''33''' reactions in the full pathway
+
== Reaction(s) not found ==
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
* '''132''' reaction(s) not found
−
** '''27''' reactions found over '''93''' reactions in the full pathway
+
** [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
−
* [[map00360]]: [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
+
** [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
−
** '''9''' reactions found over '''109''' reactions in the full pathway
+
** [http://bigg.ucsd.edu/universal/reactions/DAPOP DAPOP]
−
* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
+
** [http://bigg.ucsd.edu/universal/reactions/GLYOX3 GLYOX3]
−
** '''10''' reactions found over '''102''' reactions in the full pathway
+
** [http://bigg.ucsd.edu/universal/reactions/LALDO3 LALDO3]
−
* [[map00960]]: [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960]
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** [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
−
** '''3''' reactions found over '''27''' reactions in the full pathway
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** [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
** [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
−
** '''156''' reactions found over '''694''' reactions in the full pathway
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** [http://bigg.ucsd.edu/universal/reactions/LCADi_D LCADi_D]
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
+
** [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
−
** '''21''' reactions found over '''59''' reactions in the full pathway
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** [http://bigg.ucsd.edu/universal/reactions/PDHe2hr PDHe2hr]
−
* [[map00401]]: [http://www.genome.jp/dbget-bin/www_bget?map00401 map00401]
+
** [http://bigg.ucsd.edu/universal/reactions/AGPOP AGPOP]
−
** '''3''' reactions found over '''17''' reactions in the full pathway
+
** [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
−
== Reconstruction information  ==
+
** [http://bigg.ucsd.edu/universal/reactions/PDHam2mi PDHam2mi]
−
* [[orthology]]:
+
** [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
−
** [[pantograph]]:
+
** [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
−
*** [[l_plantarum_wcfs1]]
+
** [http://bigg.ucsd.edu/universal/reactions/LacR LacR]
−
*** [[b_subtilis_subsp_subtilis_str168]]
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** [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
 +
** [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
 +
** [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
** [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
** [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
** [http://bigg.ucsd.edu/universal/reactions/AGPOPm AGPOPm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACOAHim ACOAHim]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHam2hi PDHam2hi]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHa PDHa]
 +
** [http://bigg.ucsd.edu/universal/reactions/FUM FUM]
 +
** [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHe2r PDHe2r]
 +
** [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
** [http://bigg.ucsd.edu/universal/reactions/MALS MALS]
 +
** [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
 +
** [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
 +
** [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
 +
** [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
 +
** [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
 +
** [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
** [http://bigg.ucsd.edu/universal/reactions/MOSDC MOSDC]
 +
** [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
** [http://bigg.ucsd.edu/universal/reactions/MOX MOX]
 +
** [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
 +
** [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHam1mi PDHam1mi]
 +
** [http://bigg.ucsd.edu/universal/reactions/LCADi_Dm LCADi_Dm]
 +
** [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
 +
** [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ALDD2xm ALDD2xm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACS ACS]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
 +
** [http://bigg.ucsd.edu/universal/reactions/ALDD2ym ALDD2ym]
 +
** [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
 +
** [http://bigg.ucsd.edu/universal/reactions/DMALRED DMALRED]
 +
** [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
 +
** [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHbr PDHbr]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
 +
** [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYKm PYKm]
 +
** [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACOAH ACOAH]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACPh ACPh]
 +
** [http://bigg.ucsd.edu/universal/reactions/APhi APhi]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYK4 PYK4]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYK5 PYK5]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYK2 PYK2]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYK3 PYK3]
 +
** [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
** [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
 +
** [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYKf PYKf]
 +
** [http://bigg.ucsd.edu/universal/reactions/ALR ALR]
 +
** [http://bigg.ucsd.edu/universal/reactions/GTPOPm GTPOPm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHm PDHm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
 +
** [http://bigg.ucsd.edu/universal/reactions/LDHm LDHm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PPCSCT PPCSCT]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
 +
** [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
 +
** [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
 +
** [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
** [http://bigg.ucsd.edu/universal/reactions/LO LO]
 +
** [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
 +
** [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
** [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHam1hi PDHam1hi]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
 +
** [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK]
 +
** [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
** [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
 +
** [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACYP ACYP]
 +
** [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
 +
** [http://bigg.ucsd.edu/universal/reactions/L_LACDcm L_LACDcm]
 +
** [http://bigg.ucsd.edu/universal/reactions/PEPCKm PEPCKm]
 +
** [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
 +
** [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
 +
** [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
 +
** [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
 +
** [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
 +
** [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.6.1.1
+
{{#set: common_name=Pyruvate metabolism}}
−
* BioCyc : META:ASPAMINOTRANS-RXN
+
{{#set: reaction found=31}}
−
* MetaNetX (MNX) Equation : MNXR96079
+
{{#set: reaction not found=132}}
−
* RHEA:
+
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
+
−
* Reactome : REACT_R-ATH-70596
+
−
* KEGG Reaction : R00355
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Aspartate transaminase}}
+
−
{{#set: gene associated=EF2372}}
+
−
{{#set: in pathway=map01100|map00220|map01110|map01230|map01120|map01210|map00270|map01200|map00330|map00710|map00950|map00250|map00360|map00350|map00960|map01130|map00400|map00401}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 16:40, 10 January 2018

Pathway map00620

  • common_name:
    • Pyruvate metabolism
  • Synonym(s):

Reaction(s) found

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=WCOS&oldid=3302"