Manual-1 new rxn for biomass

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 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
2HBO2 HydroxybutyrateNAD oxidoreductaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map01110
Map00640
Map01120
Map00270
Map00620
Map00010
Map01130
AASAD3L-aminoadipate-semialdehyde dehydrogenase (NADH)Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00310
Map01110
Map00300
Map01230
Map01130
AASDH1 cL-aminoadipate-semialdehyde dehydrogenase (NADPH)Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
AASS cAminoadipic semialdehyde synthaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
ACGSN-acetylglutamate synthaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00220
Map01110
Map01210
Map01230
Map01130
ACONTAconitate hydrataseGap-fillingMenecoAdded for gapfillingMap01100
Map00630
Map01110
Map01120
Map01210
Map00720
Map01230
Map01200
Map00020
Map01130
ACONTaAconitase (half-reaction A, Citrate hydro-lyase)Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00630
Map01110
Map01120
Map01210
Map00720
Map00020
Map01130
ACONTbAconitase (half-reaction B, Isocitrate hydro-lyase)Gap-fillingMenecoAdded for gapfillingMap01100
Map00630
Map01110
Map01120
Map01210
Map00720
Map00020
Map01130
ACP1 FMNAcid phosphatase (FMN)Gap-fillingMenecoAdded for gapfillingMap01100
Map00740
ADMDCAdenosylmethionine decarboxylaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00270
Map00330
AGTiAlanine glyoxylate aminotransferase irreversibleGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap00250
Map00270
Map01110
Map01100
Map00260
AMAOTrAdenosylmethionine-8-amino-7-oxononanoate transaminaseGap-fillingMenecoAdded for gapfillingMap01100
Map00780
ANPRTAnthranilate phosphoribosyltransferaseGap-fillingMenecoAdded for gapfillingMap01100
Map01130
Map00400
Map01110
Map01230
ANSAnthranilate synthaseGap-fillingMenecoAdded for gapfillingMap01100
Map01110
Map01230
Map01130
Map00400
Map00405
ANS2Anthranilate synthase 2Gap-fillingMenecoAdded for gapfillingMap01100
Map01130
Map00400
Map01110
Map00405
AOXSr8-amino-7-oxononanoate synthaseGap-fillingMenecoAdded for gapfillingMap01100
Map00780
Map01120
ARGSLArgininosuccinate lyaseGap-fillingMenecoAdded for gapfillingMap01100
Map00220
Map01110
Map01230
Map00250
Map01130
ARGSSArgininosuccinate synthaseGap-fillingMenecoAdded for gapfillingMap01100
Map00220
Map01110
Map01230
Map00250
Map01130
ARGSS 1Argininosuccinate synthaseGap-fillingMenecoAdded for gapfillingMap01100
Map00220
Map01110
Map01230
Map00250
Map01130
ASNS1Asparagine synthase (glutamine-hydrolysing)Gap-fillingMenecoAdded for gapfillingMap01100
Map00250
Map01110
ASNS2Asparagine synthetaseGap-fillingMenecoAdded for gapfillingMap01100
Map00460
Map00250
Map01110
ATPPRTATP phosphoribosyltransferaseGap-fillingMenecoAdded for gapfillingMap01100
Map00340
Map01110
Map01230
Aratyr1Aromatic amino acid aminotransferase tyrosineGap-fillingMenecoAdded for gapfilling
Aratyr2Aromatic amino acid aminotransferase tyrosineGap-fillingMenecoAdded for gapfilling
Aratyr3Aromatic amino acid aminotransferase tyrosineGap-fillingMenecoAdded for gapfilling
Aratyr4Aromatic amino acid aminotransferase tyrosineGap-fillingMenecoAdded for gapfilling
BLUBCobalamin biosynthesisGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
BTS2Biotin synthase (ala-L producing)Gap-fillingMenecoAdded for gapfilling
BTS6Biotin synthaseGap-fillingMenecoAdded for gapfilling
BZDHBenzaldehyde dehydrogenaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map01220
Map01120
Map00627
Map00622
Map00623
Map00350
CHCOAL6-carboxyhexanoate-CoA ligaseGap-fillingMenecoAdded for gapfillingMap01100
Map00780
CKcATP Creatine kinase (c)Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00330
CKc choATP Creatine kinase (c)Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
CRTNsynCreatinine synthaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00330
CRTNsyn choCreatinine synthaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
CSCitrate synthaseGap-fillingMenecoAdded for gapfillingMap01100
Map00630
Map01110
Map01120
Map01210
Map01200
Map01230
Map00020
Map01130
CSPMDDCCarboxynorspermidine decarboxylaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00330
CSPMDDHCarboxyspermidine dehydrogenaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00330
DBRCDimethylbenzimidazole-riboflavin conversionGap-fillingMenecoAdded for gapfilling
DBTSDethiobiotin synthaseGap-fillingMenecoAdded for gapfillingMap01100
Map00780
DHAD1Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)Gap-fillingMenecoAdded for gapfillingMap01100
Map01110
Map00770
Map00290
Map01210
Map01230
Map01130
DHAD2Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)Gap-fillingMenecoAdded for gapfillingMap01100
Map01110
Map00770
Map00290
Map01210
Map01230
Map01130
DMBZIDS25,6-dimethylbenzimidazole synthaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
FAS100Fatty acid synthase n C100Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00061
FAS120Fatty acid synthase n C120Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00061
FAS140Fatty acid synthase n C140Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00061
FAS80 LFatty acid synthase n C80 lumped reactionGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00061
G5SADsL-glutamate 5-semialdehyde dehydratase (spontaneous)Gap-fillingMenecoAdded for gapfillingMap01100
Map01110
Map00330
Map00332
Map01230
Map01130
GACMTRcGuanidinoacetate N-methyltransferase (c)Gap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfillingMap01100
Map00330
Map00260
GGCLUT2Glutathione-specific gamma-glutamylcyclotransferaseGap-fillingMenecoGap-filling-gapfilling solution with meneco draft mediumAdded for gapfilling
... further results
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