Difference between revisions of "RXN-13162"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == * direction: ** LEFT-TO-RIGHT * common name: ** squalene synthase ** farnes...") |
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* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/2.5.1.21 EC-2.5.1.21] | ||
* common name: | * common name: | ||
** squalene synthase | ** squalene synthase | ||
** farnesyl-diphosphate farnesyltransferase | ** farnesyl-diphosphate farnesyltransferase | ||
| − | |||
| − | |||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** | + | ** 2 [[FARNESYL-PP]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[SQUALENE]][c] '''+''' 2 [[PPI]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** | + | ** 2 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c] '''=>''' 1 squalene[c] '''+''' 2 diphosphate[c] '''+''' 1 NAD(P)+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | |||
| − | |||
| − | |||
* Gene: [[SJ13532]] | * Gene: [[SJ13532]] | ||
** Source: [[annotation-saccharina_japonica_genome]] | ** Source: [[annotation-saccharina_japonica_genome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[SJ02885]] | ||
| + | ** Source: [[annotation-saccharina_japonica_genome]] | ||
| + | *** Assignment: GO-TERM | ||
== Pathways == | == Pathways == | ||
* [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670] | * [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670] | ||
| Line 42: | Line 42: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223] | ** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: ec number=EC-2.5.1.21}} | ||
{{#set: common name=squalene synthase}} | {{#set: common name=squalene synthase}} | ||
{{#set: common name=farnesyl-diphosphate farnesyltransferase}} | {{#set: common name=farnesyl-diphosphate farnesyltransferase}} | ||
| − | + | {{#set: gene associated=SJ13532|SJ02885}} | |
| − | {{#set: gene associated=SJ02885 | + | |
{{#set: in pathway=PWY-5670}} | {{#set: in pathway=PWY-5670}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-saccharina_japonica_genome|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 12:02, 10 January 2019
Contents
Reaction RXN-13162
- direction:
- LEFT-TO-RIGHT
- ec number:
- common name:
- squalene synthase
- farnesyl-diphosphate farnesyltransferase
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 FARNESYL-PP[c] + 1 NADH-P-OR-NOP[c] + 1 PROTON[c] => 1 SQUALENE[c] + 2 PPI[c] + 1 NAD-P-OR-NOP[c]
- With common name(s):
- 2 (2E,6E)-farnesyl diphosphate[c] + 1 NAD(P)H[c] + 1 H+[c] => 1 squalene[c] + 2 diphosphate[c] + 1 NAD(P)+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: SJ13532
- Source: annotation-saccharina_japonica_genome
- Assignment: EC-NUMBER
- Source: orthology-ectocarpus_siliculosus
- Source: annotation-saccharina_japonica_genome
- Gene: SJ02885
- Source: annotation-saccharina_japonica_genome
- Assignment: GO-TERM
- Source: annotation-saccharina_japonica_genome
Pathways
- PWY-5670, epoxysqualene biosynthesis: PWY-5670
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-saccharina_japonica_genome
- Tool: pathwaytools
- Source: annotation-saccharina_japonica_genome
External links
