Difference between revisions of "RXN-8661"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] == * direction: ** LEFT-TO-RIGHT * common name: ** [histone-H3]-lysine-36 demeth...")
 
 
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* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* common name:
 
* common name:
 
** [histone-H3]-lysine-36 demethylase
 
** [histone-H3]-lysine-36 demethylase
 
** histone demethylase activity (H3-K36 specific)
 
** histone demethylase activity (H3-K36 specific)
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
 
* Synonym(s):
 
* Synonym(s):
 
** JHDM1A
 
** JHDM1A
Line 18: Line 18:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-8901]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[FORMALDEHYDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 H+[c] '''+''' 1 a [protein] N6-methyl-L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 a [protein]-L-lysine[c] '''+''' 1 formaldehyde[c] '''+''' 1 succinate[c]
+
** 1 H+[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 a [protein] N6-methyl-L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 a [protein]-L-lysine[c] '''+''' 1 succinate[c] '''+''' 1 formaldehyde[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[SJ19354]]
 
−
** Source: [[annotation-saccharina_japonica_genome]]
 
−
*** Assignment: GO-TERM
 
 
* Gene: [[SJ18735]]
 
* Gene: [[SJ18735]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ13421]]
+
* Gene: [[SJ05371]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 36: Line 33:
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ05371]]
+
* Gene: [[SJ00708]]
 +
** Source: [[annotation-saccharina_japonica_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[SJ13421]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[SJ00708]]
+
* Gene: [[SJ19354]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
** Source: [[annotation-saccharina_japonica_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
Line 48: Line 48:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-1.14.11}}
 
{{#set: common name=[histone-H3]-lysine-36 demethylase}}
 
{{#set: common name=[histone-H3]-lysine-36 demethylase}}
 
{{#set: common name=histone demethylase activity (H3-K36 specific)}}
 
{{#set: common name=histone demethylase activity (H3-K36 specific)}}
−
{{#set: ec number=EC-1.14.11}}
 
 
{{#set: common name=JHDM1A|JmjC domain-containing histone demethylase 1A|H3-K36-specific demethylase|histone-lysine (H3-K36) demethylase|histone demethylase|protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase}}
 
{{#set: common name=JHDM1A|JmjC domain-containing histone demethylase 1A|H3-K36-specific demethylase|histone-lysine (H3-K36) demethylase|histone demethylase|protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase}}
−
{{#set: gene associated=SJ19354|SJ18735|SJ13421|SJ19102|SJ05371|SJ00708}}
+
{{#set: gene associated=SJ18735|SJ05371|SJ19102|SJ00708|SJ13421|SJ19354}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction source=annotation-saccharina_japonica_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 16:27, 10 January 2019

Reaction RXN-8661

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • common name:
    • [histone-H3]-lysine-36 demethylase
    • histone demethylase activity (H3-K36 specific)
  • Synonym(s):
    • JHDM1A
    • JmjC domain-containing histone demethylase 1A
    • H3-K36-specific demethylase
    • histone-lysine (H3-K36) demethylase
    • histone demethylase
    • protein-6-N,6-N-dimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links


"histone-H3]-lysine-36 demethylase" cannot be used as a page name in this wiki.




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