Manual

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 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
1.1.1.8-RXNORF
Glycerol-3-phosphate dehydrogenase
EC-1.1.1.8Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 13013
Tiso gene 15777
Tiso gene 6069
Tiso gene 2810
Tiso gene 2811
Tiso gene 3718
PWY-6118
PWY-7385
PWY-7411
1.10.2.2-RXNCytochrome b6-fcomplexiron-sulfurchloroplastic
Ubiquinol-cytochrome c reductase
Probable mitochondrial-processingpeptidasesubunitbeta
EC-1.10.2.2Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Orthology-esiliculosus
Tiso gene 7235
Tiso gene 9627
Tiso gene 4973
Tiso gene 18330
Tiso gene 15926
PWY-7279
PWY-7082
PWY-3781
1.18.1.2-RXNFerredoxin--nadp embryochloroplastic
Ferredoxin--nadp root isozyme chloroplastic
EC-1.18.1.2Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus
Tiso gene 20054
Tiso gene 19031
Tiso gene 17381
Tiso gene 17170
Tiso gene 20055
Tiso gene 20168
PWY-7230
PWY-101
1.2.1.13-RXNGlyceraldehyde-3-phosphate dehydrogenaseEC-1.2.1.13Manual
Annotation
PathwaytoolsAnnotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Tiso gene 6765
Tiso gene 20000
Tiso gene 10646
Tiso gene 6766
CALVIN-PWY
1.5.1.20-RXNMethylenetetrahydrofolate reductase
-methylenetetrahydrofolate reductase
EC-1.5.1.20Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus
Tiso gene 16954
Tiso gene 14582
PWY-2201
1CMET2-PWY
CODH-PWY
PWY-3841
1.5.5.1-RXNEC-1.5.5.1Orthology
Manual
PantographManual-primary network
Orthology-esiliculosus
Tiso gene 18526
1.8.4.9-RXNEC-1.8.4.9ManualManual-primary networkSULFMETII-PWY
1TRANSKETO-RXNTransketolaseEC-2.2.1.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-in-silico annotation
Manual-primary network
Orthology-athaliana
Annotation-experimental annotation
Orthology-synechocystis
Tiso gene 5008
Tiso gene 11559
P124-PWY
CALVIN-PWY
P21-PWY
PWY-5723
PWY-1861
P185-PWY
NONOXIPENT-PWY
2-ISOPROPYLMALATESYN-RXN2-isopropylmalate synthase chloroplasticEC-2.3.3.13Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 11453LEUSYN-PWY
PWY-6871
2.5.1.19-RXNPentafunctional proteinEC-2.5.1.19Orthology
Manual
Annotation
Pantograph
Pathwaytools
Orthology-creinhardtii
Manual-primary network
Annotation-in-silico annotation
Orthology-athaliana
Tiso gene 5752
Tiso gene 5753
PWY-6163
2.7.1.148-RXN4-diphosphocytidyl-2-c-methyl-d-erythritol kinaseEC-2.7.1.148Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 13463NONMEVIPP-PWY
PWY-7560
2.7.7.60-RXN2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase
4-diphosphocytidyl-2-methylerithritol synthase (sugar nucleotide phosphorylase family)
EC-2.7.7.60Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 17568NONMEVIPP-PWY
PWY-7560
2OXOGLUTDECARB-RXNDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase mitochondrial
Oxoglutarate decarboxylase
2-oxoglutarate decarboxylation
EC-1.2.4.2Manual
Annotation
PathwaytoolsAnnotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Tiso gene 10209PWY66-398
PWY-5084
2PGADEHYDRAT-RXNBifunctional enolase2transcriptionalactivator
Bifunctional enolase 2 transcriptional activator
Enolase 1
EC-4.2.1.11Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 5619
Tiso gene 13317
Tiso gene 14718
Tiso gene 8720
PWY-1042
P341-PWY
PWY-2221
PWY-7124
PWY-1622
GLUCONEO-PWY
GLYCOLYSIS
NPGLUCAT-PWY
ANAGLYCOLYSIS-PWY
PWY-7218
PWY-6901
P124-PWY
PWY-6886
PWY-5723
PWY-6142
P122-PWY
PWY66-399
PWY-5484
PWY-7003
2TRANSKETO-RXNTransketolaseEC-2.2.1.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Orthology-creinhardtii
Annotation-experimental annotation
Orthology-athaliana
Annotation-in-silico annotation
Manual-primary network
Tiso gene 11559
Tiso gene 5008
PWY-6901
CALVIN-PWY
P21-PWY
PWY-5723
PWY-1861
P185-PWY
NONOXIPENT-PWY
3-DEHYDROQUINATE-DEHYDRATASE-RXNPentafunctional proteinEC-4.2.1.10Orthology
Manual
Annotation
Pantograph
Pathwaytools
Orthology-athaliana
Annotation-in-silico annotation
Manual-primary network
Orthology-esiliculosus
Tiso gene 5619
Tiso gene 14718
Tiso gene 8720
Tiso gene 5753
Tiso gene 5752
PWY-6163
PWY-6416
QUINATEDEG-PWY
PWY-6707
3-DEHYDROQUINATE-SYNTHASE-RXN3-dehydroquinate synthase
Pentafunctional protein
EC-4.2.3.4Orthology
Manual
Annotation
Pantograph
Pathwaytools
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 5753
Tiso gene 3446
Tiso gene 3445
Tiso gene 3974
Tiso gene 5752
Tiso gene 3447
PWY-6164
3-OXOACYL-ACP-SYNTH-BASE-RXN3-oxoacyl-synthase
Polyketide synthase
EC-2.3.1.86
EC-2.3.1.85
EC-2.3.1.41
Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Tiso gene 19302
Tiso gene 136
Tiso gene 14485
Tiso gene 13394
Tiso gene 5939
Tiso gene 135
Tiso gene 10876
Tiso gene 500
Tiso gene 15991
PWY-5965
PWY-5966
FASYN-INITIAL-PWY
PWY-7388
3PGAREARR-RXNPhosphoglycerate mutase
Bisphosphoglycerate-dependent phosphoglycerate mutase
ORF
Plastid phosphoglycerate mutase protein
EC-5.4.2.12Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 16271
Tiso gene 5468
Tiso gene 14530
Tiso gene 7201
Tiso gene 20311
Tiso gene 2365
Tiso gene 10516
Tiso gene 16754
Tiso gene 9922
Tiso gene 2667
Tiso gene 15391
Tiso gene 2841
Tiso gene 15048
Tiso gene 14212
Tiso gene 9923
Tiso gene 14664
PWY-1042
P341-PWY
PWY-2221
GLUCONEO-PWY
GLYCOLYSIS
PWY-6901
PWY-7218
P124-PWY
PWY-6886
PWY-5723
PWY-6142
PWY-5484
PWY-7124
PWY-7003
4.2.1.58-RXNPolyketide synthase
Β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
Β-hydroxybutyryl acyl carrier protein dehydrase
Enoyl acyl carrier protein hydrase
Crotonyl acyl carrier protein hydratase
3-hydroxybutyryl acyl carrier protein dehydratase
EC-2.3.1.86
EC-2.3.1.85
EC-4.2.1.59
Manual
Annotation
PathwaytoolsAnnotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Tiso gene 6884
Tiso gene 13394
Tiso gene 136
Tiso gene 500
Tiso gene 135
Tiso gene 10876
PWY-5971
PWY-5994
PWY-7388
4.2.1.59-RXNPolyketide synthaseEC-2.3.1.86
EC-2.3.1.85
EC-4.2.1.59
Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Orthology-synechocystis
Tiso gene 500
Tiso gene 13394
Tiso gene 10876
Tiso gene 135
Tiso gene 6884
Tiso gene 6885
Tiso gene 136
PWY-5971
PWY-5994
4.2.1.61-RXNPolyketide synthase
Β-hydroxypalmitoyl-acyl carrier protein dehydrase
Β-hydroxypalmitoyl thioester dehydratase
Β-hydroxypalmityl-ACP dehydrase
EC-2.3.1.86
EC-2.3.1.85
EC-4.2.1.59
Manual
Annotation
PathwaytoolsAnnotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Tiso gene 136
Tiso gene 13394
Tiso gene 10876
Tiso gene 500
Tiso gene 6884
Tiso gene 135
PWY-5971
PWY-5994
4.3.1.17-RXNEC-4.3.1.17Orthology
Manual
PantographManual-primary network
Orthology-creinhardtii
Orthology-synechocystis
Tiso gene 12535
6PFRUCTPHOS-RXNPyrophosphate-dependent phosphofructose kinaseEC-2.7.1.11Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Manual-primary network
Orthology-creinhardtii
Tiso gene 5733
Tiso gene 596
PWY-1042
GLYCOLYSIS
PWY-7385
PWY-1861
ANAGLYCOLYSIS-PWY
PWY-5484
6PGLUCONOLACT-RXNORF
6-phosphogluconolactonase
EC-3.1.1.31Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Manual-primary network
Orthology-creinhardtii
Tiso gene 10799
Tiso gene 5901
Tiso gene 15950
Tiso gene 8585
Tiso gene 20412
P122-PWY
RUMP-PWY
OXIDATIVEPENT-PWY
GLYCOLYSIS-E-D
ACETATE--COA-LIGASE-RXNAcetyl-coenzyme a synthetaseEC-6.2.1.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 3617
Tiso gene 1612
Tiso gene 3616
PWY66-161
PWY66-21
PWY66-162
PWY0-1313
PWY-6672
PWY-7118
ACETOLACTREDUCTOISOM-RXN2,3-Dihydroxy-3-methylbutanoate:DP+ oxidoreductase (isomerizing), chloroplastEC-1.1.1.86Orthology
Manual
Annotation
Pantograph
Pathwaytools
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus
Tiso gene 10173VALSYN-PWY
PWY-7111
ACETOLACTSYN-RXNAcetolactate synthase catalytic subunit, mitochondrialEC-2.2.1.6Manual
Annotation
PathwaytoolsManual-primary network
Annotation-experimental annotation
Tiso gene 11362VALSYN-PWY
PWY-7111
PWY-6389
PWY-5938
PWY-5939
ACETOOHBUTREDUCTOISOM-RXN2,3-Dihydroxy-3-methylbutanoate:DP+ oxidoreductase (isomerizing), chloroplastEC-1.1.1.86Orthology
Manual
Annotation
Pantograph
Pathwaytools
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus
Tiso gene 10173PWY-5103
ILEUSYN-PWY
ACETOOHBUTSYN-RXN2-aceto-2-hydroxy-butyrate synthase
Acetolactate synthase catalytic subunit, mitochondrial
EC-2.2.1.6Manual
Annotation
PathwaytoolsManual-primary network
Annotation-experimental annotation
Tiso gene 11362PWY-5103
ILEUSYN-PWY
PWY-5101
PWY-5104
ACETYL-COA-CARBOXYLTRANSFER-RXNEC-6.4.1.2Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-in-silico annotation
Orthology-athaliana
Annotation-experimental annotation
Manual-primary network
Orthology-esiliculosus
Tiso gene 3800
Tiso gene 5029
Tiso gene 2812
Tiso gene 7965
PWY-7388
PWY-6722
PWY-5743
PWY-5744
PWY-5789
PWY-6679
PWY-4381
ACP-S-ACETYLTRANSFER-RXNPolyketide synthaseEC-2.3.1.86
EC-2.3.1.85
EC-2.3.1.38
Orthology
Manual
Annotation
Pantograph
Pathwaytools
Manual-primary network
Orthology-athaliana
Annotation-in-silico annotation
Orthology-synechocystis
Tiso gene 13394
Tiso gene 15991
Tiso gene 10876
Tiso gene 136
Tiso gene 500
Tiso gene 135
PWY-5966
FASYN-INITIAL-PWY
ACSERLY-RXNCysteine synthase
Cog0031: cysteine synthase
Cysteine
EC-2.5.1.47Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 6110
Tiso gene 12184
Tiso gene 2283
Tiso gene 819
Tiso gene 17043
Tiso gene 7852
CYSTSYN-PWY
ADENOSINE-KINASE-RXNORFEC-2.7.1.20Manual
Annotation
PathwaytoolsAnnotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Tiso gene 12078PWY-6619
ADENOSYLHOMOCYSTEINASE-RXNAdenosylhomocysteinase 1EC-3.3.1.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 14191METHIONINE-DEG1-PWY
PWY-5041
ADENYL-KIN-RXNAdenylate kinase (Fragment) n
ORF
Adenylate kinase
Adenylate kinase 4
Central pair complex 1
EC-2.7.4.3Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 694
Tiso gene 5837
Tiso gene 12257
Tiso gene 4816
Tiso gene 5839
Tiso gene 19036
Tiso gene 12256
Tiso gene 8576
Tiso gene 5387
Tiso gene 5081
Tiso gene 1453
Tiso gene 14116
Tiso gene 13477
Tiso gene 5388
Tiso gene 805
Tiso gene 3353
Tiso gene 19734
PWY-7219
ADENYLOSUCCINATE-SYNTHASE-RXNAdenylosuccinate synthase
Adenylosuccinate synthetase
EC-6.3.4.4Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 6453
Tiso gene 743
PWY-7219
ADPREDUCT-RXNADP reductase
Ribonucleoside-diphosphate reductase
EC-1.17.4.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Tiso gene 10617
Tiso gene 9916
Tiso gene 10138
Tiso gene 9915
PWY-7220
PWY-7227
AICARSYN-RXNEC-4.3.2.2Manual
Annotation
PathwaytoolsManual-primary network
Annotation-in-silico annotation
PWY-6123
PWY-6124
PWY-7234
AICARTRANSFORM-RXNBifunctional purine biosynthesis
5-aminoimidazole-4-carboxamide ribonucleotide transformylase
EC-2.1.2.3Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus
Tiso gene 18420PWY-6123
PWY-6124
AIRCARBOXY-RXNPhosphoribosylaminoimidazole carboxylaseEC-4.1.1.21Orthology
Manual
Annotation
Pantograph
Pathwaytools
Orthology-athaliana
Annotation-in-silico annotation
Manual-primary network
Orthology-esiliculosus
Tiso gene 16011PWY-6124
AIRS-RXNEC-6.3.3.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Orthology-synechocystis
Tiso gene 1369PWY-6121
PWY-6122
PWY-6277
ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXNAcetylornithine aminotransferaseEC-2.6.1.44Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Orthology-athaliana
Orthology-esiliculosus
Tiso gene 11231
Tiso gene 6134
Tiso gene 5726
GLYSYN-ALA-PWY
ALANINE-AMINOTRANSFERASE-RXNAlanine aminotransferase mitochondrial
Alanine aminotransferase
EC-2.6.1.2Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-athaliana
Annotation-in-silico annotation
Manual-primary network
Orthology-esiliculosus
Tiso gene 5959
Tiso gene 10957
ALANINE-DEG3-PWY
PWY-7383
PWY-7117
ALACAT2-PWY
PWY-7115
ALANINE-SYN2-PWY
AMPSYN-RXNEC-4.3.2.2Manual
Annotation
PathwaytoolsAnnotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
PWY-7219
ANTHRANSYN-RXNAnthranilate synthaseEC-4.1.3.27Orthology
Manual
Annotation
Pantograph
Pathwaytools
Orthology-athaliana
Annotation-in-silico annotation
Manual-primary network
Orthology-esiliculosus
Tiso gene 11176TRPSYN-PWY
PWY-5958
PWY-6661
PWY-6660
ARGSUCCINLYA-RXNArgininosuccinate lyaseEC-4.3.2.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 2485PWY-4984
ARGSYN-PWY
PWY-5154
ARGSYNBSUB-PWY
PWY-4983
PWY-7400
ARGSUCCINSYN-RXNArgininosuccinate synthaseEC-6.3.4.5Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 12592PWY-5154
ARGSYN-PWY
PWY-4984
ARGSYNBSUB-PWY
PWY-4983
PWY-7400
ASNSYNB-RXNAsparagine synthetase
Asparagine synthetase domaincontaining protein putat
EC-6.3.5.4Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-athaliana
Annotation-in-silico annotation
Manual-primary network
Orthology-esiliculosus
Tiso gene 2973
Tiso gene 7495
ASPARAGINE-BIOSYNTHESIS
ASPAMINOTRANS-RXNAminotransferase
Aspartate aminotransferase
EC-2.6.1.1Orthology
Manual
Annotation
Pantograph
Pathwaytools
Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-athaliana
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii
Tiso gene 17809
Tiso gene 6815
Tiso gene 17718
Tiso gene 13538
Tiso gene 12889
Tiso gene 15680
PWY-5913
MALATE-ASPARTATE-SHUTTLE-PWY
PWY-7383
ASPARTATE-DEG1-PWY
ASPARTATESYN-PWY
PWY-7117
GLUTDEG-PWY
PWY-7115
ASPARAGINE-DEG1-PWY-1
... further results