Difference between revisions of "CPD-12366"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8607 CPD-8607] == * smiles: ** CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** threonine_mitochond...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8607 CPD-8607] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] ==
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* smiles:
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* direction:
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** CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SJPDNXKPBQHPMZ-PUXRVUTHSA-N
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* common name:
 
* common name:
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** 4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8-en-3β-ol
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** threonine_mitochondrial
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* molecular weight:
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** ORF
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** 444.74   
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** serine_racemase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.3.1.19 EC-4.3.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN66-12]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[THR]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[RXN66-11]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 L-threonine[c] '''=>''' 1 2-oxobutanoate[c] '''+''' 1 ammonium[c]
 +
 
 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17207]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8525]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12535]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY66-428]], L-threonine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15698821 15698821]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22108 22108]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=87057 87057]
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** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
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* HMDB : HMDB12160
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* UNIPROT:
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{{#set: smiles=CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C}}
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** [http://www.uniprot.org/uniprot/P25306 P25306]
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{{#set: inchi key=InChIKey=SJPDNXKPBQHPMZ-PUXRVUTHSA-N}}
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** [http://www.uniprot.org/uniprot/Q04513 Q04513]
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{{#set: common name=4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8-en-3β-ol}}
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** [http://www.uniprot.org/uniprot/P37946 P37946]
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{{#set: molecular weight=444.74    }}
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** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
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{{#set: consumed by=RXN66-12}}
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** [http://www.uniprot.org/uniprot/Q02145 Q02145]
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{{#set: produced by=RXN66-11}}
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** [http://www.uniprot.org/uniprot/P66897 P66897]
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** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
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** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
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** [http://www.uniprot.org/uniprot/P25379 P25379]
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** [http://www.uniprot.org/uniprot/P00927 P00927]
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** [http://www.uniprot.org/uniprot/P20506 P20506]
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** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
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** [http://www.uniprot.org/uniprot/P04968 P04968]
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** [http://www.uniprot.org/uniprot/P20132 P20132]
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** [http://www.uniprot.org/uniprot/P09367 P09367]
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** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
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** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
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** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
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** [http://www.uniprot.org/uniprot/P31212 P31212]
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** [http://www.uniprot.org/uniprot/P36007 P36007]
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** [http://www.uniprot.org/uniprot/P73375 P73375]
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** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
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** [http://www.uniprot.org/uniprot/Q39469 Q39469]
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** [http://www.uniprot.org/uniprot/Q93968 Q93968]
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** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
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** [http://www.uniprot.org/uniprot/O94634 O94634]
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** [http://www.uniprot.org/uniprot/O59791 O59791]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=threonine_mitochondrial}}
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{{#set: common name=ORF}}
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{{#set: common name=serine_racemase}}
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{{#set: ec number=EC-4.3.1.19}}
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{{#set: gene associated=Tiso_gene_17207|Tiso_gene_8525|Tiso_gene_12535}}
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{{#set: in pathway=PWY66-428}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:48, 10 January 2018

Reaction THREDEHYD-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • threonine_mitochondrial
    • ORF
    • serine_racemase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-threonine[c] => 1 2-oxobutanoate[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-428, L-threonine degradation V: PWY66-428
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links








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