Difference between revisions of "CHONDROITIN-4-SULFATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7659 RXN-7659] == * direction: ** REVERSIBLE * common name: ** geranylgeranyl_diphosphate_reduc...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1141 RXN0-1141] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoate--GcvH protein ligas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7659 RXN-7659] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1141 RXN0-1141] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** geranylgeranyl_diphosphate_reductase
+
** lipoate--GcvH protein ligase
 +
** lipoate-protein_ligase_a
 +
** lipoate-protein_ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.3.1.20 EC-6.3.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7003]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[CPD-7002]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[LIPOIC-ACID]][c] '''+''' 1 [[Gcv-H]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 tetrahydrogeranylgeranyl diphosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 dihydrogeranylgeranyl diphosphate[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c]
+
** 1 ATP[c] '''+''' 1 (R)-lipoate[c] '''+''' 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''=>''' 1 diphosphate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 AMP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2613]]
+
* [[Tiso_gene_17215]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_17216]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_8713]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_4493]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_4494]]
 +
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5063]], phytyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5063 PWY-5063]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R08755 R08755]
+
{{#set: common name=lipoate--GcvH protein ligase}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=lipoate-protein_ligase_a}}
−
{{#set: common name=geranylgeranyl_diphosphate_reductase}}
+
{{#set: common name=lipoate-protein_ligase}}
−
{{#set: gene associated=Tiso_gene_2613}}
+
{{#set: ec number=EC-6.3.1.20}}
−
{{#set: in pathway=PWY-5063}}
+
{{#set: gene associated=Tiso_gene_17215|Tiso_gene_17216|Tiso_gene_8713|Tiso_gene_4493|Tiso_gene_4494}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:02, 10 January 2018

Reaction RXN0-1141

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lipoate--GcvH protein ligase
    • lipoate-protein_ligase_a
    • lipoate-protein_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 (R)-lipoate[c] + 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] => 1 diphosphate[c] + 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] + 1 AMP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

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