Difference between revisions of "Tiso gene 2851"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7693 RXN-7693] == * direction: ** REVERSIBLE * common name: ** polyketide_synthase ** ORF * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine-dna_gly...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7693 RXN-7693] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** formamidopyrimidine-dna_glycosylase
−
** ORF
+
** dna_glycosylase
 +
** dna-(apurinic_or_apyrimidinic_site)_lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7032]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-7031]][c]
+
** 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-methylbutanol[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-methylbutanal[c]
+
** 1 a damaged DNA pyrimidine[c] '''=>''' 1 an apyrimidinic site in DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6562]]
+
* [[Tiso_gene_16492]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_6563]]
+
* [[Tiso_gene_1280]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_5425]]
+
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_19077]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_7649]]
+
* [[Tiso_gene_19078]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16493]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_6558]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_5424]]
+
* [[Tiso_gene_11590]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_14609]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
* [[Tiso_gene_17380]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5076]], L-leucine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5076 PWY-5076]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05685 R05685]
+
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=dna_glycosylase}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-4.2.99.18}}
−
{{#set: ec number=EC-1.1.1.1}}
+
{{#set: gene associated=Tiso_gene_16492|Tiso_gene_1280|Tiso_gene_19077|Tiso_gene_19078|Tiso_gene_16493|Tiso_gene_6558|Tiso_gene_11590|Tiso_gene_14609|Tiso_gene_17380}}
−
{{#set: gene associated=Tiso_gene_6562|Tiso_gene_6563|Tiso_gene_5425|Tiso_gene_7649|Tiso_gene_5424}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-5076|PWY-6871}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:06, 10 January 2018

Reaction RXN0-2601

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • dna_glycosylase
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2851&oldid=11558"