Difference between revisions of "CPD-12513"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8022 RXN-8022] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** Crtlb ** phytoene desaturase (...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ghmp_n-terminal_doma...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8022 RXN-8022] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** ghmp_n-terminal_domain-containing_protein
 +
** ORF
 +
** galactokinase-like_protein
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.6 EC-2.7.1.6]
 
* Synonym(s):
 
* Synonym(s):
−
** Crtlb
 
−
** phytoene desaturase (ambiguous)
 
−
** 2-step phytoene desaturase (ambiguous)
 
−
** two-step phytoene desaturase (ambiguous)
 
−
** CrtI (ambiguous)
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Acceptor]][c] '''+''' 1 [[CPD1F-98]][c] '''=>''' 1 [[Donor-H2]][c] '''+''' 1 [[NEUROSPORENE]][c]
+
** 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an oxidized electron acceptor[c] '''+''' 1 all-trans-&zeta;-carotene[c] '''=>''' 1 a reduced electron acceptor[c] '''+''' 1 all-trans neurosporene[c]
+
** 1 &alpha;-D-galactose[c] '''+''' 1 ATP[c] '''<=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7142]]
+
* [[Tiso_gene_10797]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5041]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5042]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11795]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_12191]]
 +
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
+
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[athaliana]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30614 30614]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13553 13553]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04798 R04798]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=Crtlb|phytoene desaturase (ambiguous)|2-step phytoene desaturase (ambiguous)|two-step phytoene desaturase (ambiguous)|CrtI (ambiguous)}}
+
** [http://www.uniprot.org/uniprot/P09608 P09608]
−
{{#set: gene associated=Tiso_gene_7142}}
+
** [http://www.uniprot.org/uniprot/Q01415 Q01415]
−
{{#set: in pathway=PWY-6287}}
+
** [http://www.uniprot.org/uniprot/P22713 P22713]
 +
** [http://www.uniprot.org/uniprot/P31767 P31767]
 +
** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
 +
** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
 +
** [http://www.uniprot.org/uniprot/P96993 P96993]
 +
** [http://www.uniprot.org/uniprot/P04385 P04385]
 +
** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
 +
** [http://www.uniprot.org/uniprot/P13227 P13227]
 +
** [http://www.uniprot.org/uniprot/P39574 P39574]
 +
** [http://www.uniprot.org/uniprot/P13045 P13045]
 +
** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ghmp_n-terminal_domain-containing_protein}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=galactokinase-like_protein}}
 +
{{#set: ec number=EC-2.7.1.6}}
 +
{{#set: gene associated=Tiso_gene_10797|Tiso_gene_5041|Tiso_gene_5042|Tiso_gene_11795|Tiso_gene_12191}}
 +
{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527|PWY-3821}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:15, 10 January 2018

Reaction GALACTOKIN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ghmp_n-terminal_domain-containing_protein
    • ORF
    • galactokinase-like_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-D-galactose[c] + 1 ATP[c] <=> 1 H+[c] + 1 ADP[c] + 1 α-D-galactose 1-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-3821, D-galactose degradation III: PWY-3821
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-12513&oldid=12131"