Difference between revisions of "RXN-1302"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...")
 
(Created page with "Category:Gene == Gene Tiso_gene_13325 == * left end position: ** 11 * transcription direction: ** POSITIVE * right end position: ** 3499 * centisome position: ** 0.1725490...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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== Gene Tiso_gene_13325 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 11
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** trna_intron_catalytic_cterminal_subfamily_protein
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* right end position:
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* ec number:
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** 3499
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
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* centisome position:
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** 0.17254902   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ATPASE-RXN]]
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-12195]]
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* [[Tiso_gene_3776]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-12196]]
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* [[Tiso_gene_5254]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN0-5462]]
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* [[Tiso_gene_10338]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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== Pathways associated ==
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== Pathways ==
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* [[PWY-7184]]
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* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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* [[PWY-7198]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6545]]
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* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
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* [[PWY-7210]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: left end position=11}}
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=3499}}
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{{#set: common name=ORF}}
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{{#set: centisome position=0.17254902    }}
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{{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}}
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: ec number=EC-4.6.1.16}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: gene associated=Tiso_gene_3776|Tiso_gene_5254|Tiso_gene_10338}}
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{{#set: in pathway=PWY-6689|PWY-7803}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 17:15, 10 January 2018

Gene Tiso_gene_13325

  • left end position:
    • 11
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3499
  • centisome position:
    • 0.17254902
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1302&oldid=12156"