Difference between revisions of "Tiso gene 16344"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** citrate_synthase * ec num...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6627 PWY-6627] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CITSYN-RXN CITSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6627 PWY-6627] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
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** citrate_synthase
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** salinosporamide A biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.3.16 EC-2.3.3.16]
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** [http://enzyme.expasy.org/EC/2.3.3.1 EC-2.3.3.1]
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* Synonym(s):
 
* Synonym(s):
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** Condensing enzyme
 
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** citrate synthesis
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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* '''1''' reaction(s) found
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** 1 [[WATER]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CIT]][c] '''+''' 1 [[PROTON]][c]
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** [[CHORISMATEMUT-RXN]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 H2O[c] '''+''' 1 oxaloacetate[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 citrate[c] '''+''' 1 H+[c]
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* '''14''' reaction(s) not found
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11725 RXN-11725]
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== Genes associated with this reaction ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11724 RXN-11724]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11721 RXN-11721]
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* [[Tiso_gene_9602]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11720 RXN-11720]
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** IN-SILICO_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11723 RXN-11723]
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***EC-NUMBER
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11722 RXN-11722]
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* [[Tiso_gene_9601]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11718 RXN-11718]
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** IN-SILICO_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11719 RXN-11719]
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***EC-NUMBER
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11714 RXN-11714]
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** EXPERIMENTAL_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11715 RXN-11715]
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***EC-NUMBER
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11716 RXN-11716]
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* [[Tiso_gene_18030]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11717 RXN-11717]
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** IN-SILICO_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11712 RXN-11712]
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***EC-NUMBER
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11713 RXN-11713]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9603]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-201174}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16845 16845]
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{{#set: common name=salinosporamide A biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
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{{#set: reaction not found=14}}
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* PIR:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
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** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
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** [http://www.uniprot.org/uniprot/P31660 P31660]
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** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
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** [http://www.uniprot.org/uniprot/P39120 P39120]
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** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
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** [http://www.uniprot.org/uniprot/P20902 P20902]
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** [http://www.uniprot.org/uniprot/P51033 P51033]
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** [http://www.uniprot.org/uniprot/P39119 P39119]
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** [http://www.uniprot.org/uniprot/P42457 P42457]
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** [http://www.uniprot.org/uniprot/P18789 P18789]
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** [http://www.uniprot.org/uniprot/P20903 P20903]
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** [http://www.uniprot.org/uniprot/P51038 P51038]
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** [http://www.uniprot.org/uniprot/P34085 P34085]
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** [http://www.uniprot.org/uniprot/P34575 P34575]
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** [http://www.uniprot.org/uniprot/Q43175 Q43175]
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** [http://www.uniprot.org/uniprot/P43635 P43635]
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** [http://www.uniprot.org/uniprot/O24259 O24259]
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** [http://www.uniprot.org/uniprot/O32705 O32705]
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** [http://www.uniprot.org/uniprot/P00890 P00890]
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** [http://www.uniprot.org/uniprot/P08679 P08679]
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** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
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** [http://www.uniprot.org/uniprot/Q47237 Q47237]
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** [http://www.uniprot.org/uniprot/P20115 P20115]
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** [http://www.uniprot.org/uniprot/P26491 P26491]
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** [http://www.uniprot.org/uniprot/P00889 P00889]
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** [http://www.uniprot.org/uniprot/P20901 P20901]
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** [http://www.uniprot.org/uniprot/P09948 P09948]
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** [http://www.uniprot.org/uniprot/P21553 P21553]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=citrate_synthase}}
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{{#set: ec number=EC-2.3.3.16}}
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{{#set: ec number=EC-2.3.3.1}}
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{{#set: common name=Condensing enzyme|citrate synthesis}}
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{{#set: gene associated=Tiso_gene_9602|Tiso_gene_9601|Tiso_gene_18030|Tiso_gene_9603}}
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{{#set: in pathway=PWY-5913|PWY-7124|PWY-6969|PWY66-398|REDCITCYC|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|PWY-5690|PWY-5750|TCA}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:17, 10 January 2018

Pathway PWY-6627

  • taxonomic range:
  • common name:
    • salinosporamide A biosynthesis
  • Synonym(s):

Reaction(s) found

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16344&oldid=12238"