Difference between revisions of "Tiso gene 18566"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17781 RXN-17781] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17781 RXN-17781] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
 
−
** 3-hydroxyacyl-_dehydrogenase
 
−
** hydroxyacyl-coenzyme_a_mitochondrial
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/1.2.1 EC-1.2.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-19168]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-19167]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (S)-3-hydroxy-(7Z)-hexadecenoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 3-oxo-(7Z)-hexadecenoyl-CoA[c]
+
** 1 NAD+[c] '''+''' 1 coenzyme A[c] '''+''' 1 pyruvate[c] '''=>''' 1 NADH[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14262]]
+
* [[Tiso_gene_17539]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***EC-NUMBER
+
* [[Tiso_gene_19780]]
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
** [[pantograph]]-[[athaliana]]
−
* [[Tiso_gene_5857]]
+
** [[pantograph]]-[[synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***EC-NUMBER
+
* [[Tiso_gene_7519]]
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***EC-NUMBER
+
* [[Tiso_gene_9330]]
−
* [[Tiso_gene_18839]]
+
** [[pantograph]]-[[athaliana]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
−
* [[Tiso_gene_18838]]
+
** [[pantograph]]-[[esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* [[Tiso_gene_6983]]
−
***EC-NUMBER
+
** [[pantograph]]-[[athaliana]]
−
* [[Tiso_gene_14026]]
+
** [[pantograph]]-[[synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[esiliculosus]]
−
***EC-NUMBER
+
* [[Tiso_gene_2515]]
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2693]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-TCA-GLYOX-BYPASS GLYCOLYSIS-TCA-GLYOX-BYPASS]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5482]], pyruvate fermentation to acetate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5482 PWY-5482]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* [[orthology]]:
−
** [[pathwaytools]]:
+
** [[pantograph]]:
−
*** [[experimental_annotation]]
+
*** [[synechocystis]]
−
*** [[in-silico_annotation]]
+
*** [[esiliculosus]]
 +
*** [[athaliana]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
+
{{#set: ec number=EC-1.2.1}}
−
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
+
{{#set: gene associated=Tiso_gene_17539|Tiso_gene_19780|Tiso_gene_7519|Tiso_gene_9330|Tiso_gene_6983|Tiso_gene_2515|Tiso_gene_2693}}
−
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
+
{{#set: in pathway=PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
−
{{#set: ec number=EC-1.1.1.35}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: gene associated=Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_18839|Tiso_gene_18838|Tiso_gene_14026}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 16:21, 10 January 2018

Reaction PYRUVDEH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 coenzyme A[c] + 1 pyruvate[c] => 1 NADH[c] + 1 acetyl-CoA[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5537, pyruvate fermentation to acetate V: PWY-5537
    • 2 reactions found over 4 reactions in the full pathway
  • GLYCOLYSIS-TCA-GLYOX-BYPASS, superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: GLYCOLYSIS-TCA-GLYOX-BYPASS
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5482, pyruvate fermentation to acetate II: PWY-5482
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18566&oldid=12591"