Difference between revisions of "Tiso gene 11901"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16649 RXN-16649] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-lactamase * ec number:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16649 RXN-16649] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** beta-lactamase
+
** beta-glucosidase-like_chloroplastic
 +
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
 +
** ORF
 +
** beta_glucosidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
+
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-17927]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-17926]][c] '''+''' 1 [[D-ALANINE]][c]
+
** 1 [[CPD-10277]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[CPD-12699]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 H2O[c] '''=>''' 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''+''' 1 D-alanine[c]
+
** 1 lotaustralin[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 (2R)-2-hydroxy-2-methylbutanenitrile[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18870]]
+
* [[Tiso_gene_6497]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2344]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10001]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13305]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6188]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_15067]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3467]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6187]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13306]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2843]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15066]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8669]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6007]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5836]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
+
* [[PWY-6002]], lotaustralin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6002 PWY-6002]
−
** '''2''' reactions found over '''12''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7092]], neolinustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7092 PWY-7092]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=beta-lactamase}}
+
{{#set: common name=beta-glucosidase-like_chloroplastic}}
−
{{#set: ec number=EC-3.4.16.4}}
+
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
−
{{#set: gene associated=Tiso_gene_18870}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=PWY0-1586}}
+
{{#set: common name=beta_glucosidase}}
 +
{{#set: ec number=EC-3.2.1.21}}
 +
{{#set: gene associated=Tiso_gene_6497|Tiso_gene_2344|Tiso_gene_10001|Tiso_gene_13305|Tiso_gene_6188|Tiso_gene_15067|Tiso_gene_3467|Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_2843|Tiso_gene_15066|Tiso_gene_8669|Tiso_gene_6007|Tiso_gene_5836}}
 +
{{#set: in pathway=PWY-6002|PWY-7092}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:23, 10 January 2018

Reaction RXN-9674

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-glucosidase-like_chloroplastic
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 lotaustralin[c] + 1 H2O[c] => 1 D-glucopyranose[c] + 1 (2R)-2-hydroxy-2-methylbutanenitrile[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6002, lotaustralin degradation: PWY-6002
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7092, neolinustatin bioactivation: PWY-7092
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11901&oldid=12735"