Difference between revisions of "CPD-730"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6642 RXN-6642] == * direction: ** LEFT-TO-RIGHT * common name: ** aminopeptidase_n ** membrane_...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate_synthase_g * ec nu...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** malate_synthase_g |
− | + | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/3. | + | ** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[WATER]][c] '''+''' 1 [[ | + | ** 1 [[WATER]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[MAL]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 H2O[c] '''+''' 1 | + | ** 1 H2O[c] '''+''' 1 glyoxylate[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 coenzyme A[c] '''+''' 1 (S)-malate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * [[Tiso_gene_14377]] |
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
− | *** | + | ***EC-NUMBER |
+ | ** EXPERIMENTAL_ANNOTATION | ||
+ | ***EC-NUMBER | ||
** [[pantograph]]-[[esiliculosus]] | ** [[pantograph]]-[[esiliculosus]] | ||
− | |||
− | |||
− | |||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295] |
− | ** ''' | + | ** '''3''' reactions found over '''8''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294] |
− | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''7''' reactions in the full pathway |
+ | * [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
+ | ** '''11''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* [[orthology]]: | * [[orthology]]: | ||
Line 36: | Line 46: | ||
* [[annotation]]: | * [[annotation]]: | ||
** [[pathwaytools]]: | ** [[pathwaytools]]: | ||
+ | *** [[experimental_annotation]] | ||
*** [[in-silico_annotation]] | *** [[in-silico_annotation]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P42450 P42450] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02216 Q02216] | ||
+ | ** [http://www.uniprot.org/uniprot/P28344 P28344] | ||
+ | ** [http://www.uniprot.org/uniprot/P28345 P28345] | ||
+ | ** [http://www.uniprot.org/uniprot/P30952 P30952] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43827 Q43827] | ||
+ | ** [http://www.uniprot.org/uniprot/P21826 P21826] | ||
+ | ** [http://www.uniprot.org/uniprot/P37330 P37330] | ||
+ | ** [http://www.uniprot.org/uniprot/P17432 P17432] | ||
+ | ** [http://www.uniprot.org/uniprot/P17815 P17815] | ||
+ | ** [http://www.uniprot.org/uniprot/P08997 P08997] | ||
+ | ** [http://www.uniprot.org/uniprot/P21360 P21360] | ||
+ | ** [http://www.uniprot.org/uniprot/P08216 P08216] | ||
+ | ** [http://www.uniprot.org/uniprot/P13244 P13244] | ||
+ | ** [http://www.uniprot.org/uniprot/P49081 P49081] | ||
+ | ** [http://www.uniprot.org/uniprot/P45458 P45458] | ||
+ | ** [http://www.uniprot.org/uniprot/O32913 O32913] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=malate_synthase_g}} |
− | + | {{#set: ec number=EC-2.3.3.9}} | |
− | {{#set: ec number=EC-3. | + | {{#set: gene associated=Tiso_gene_14377}} |
− | {{#set: gene associated= | + | {{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}} |
− | {{#set: in pathway=PWY- | + | |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
Line 49: | Line 101: | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
− | {{#set: reconstruction source=in-silico_annotation}} | + | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}} |
Revision as of 16:24, 10 January 2018
Contents
Reaction MALSYN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- malate_synthase_g
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 H2O[c] + 1 glyoxylate[c] + 1 acetyl-CoA[c] => 1 H+[c] + 1 coenzyme A[c] + 1 (S)-malate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_14377
- IN-SILICO_ANNOTATION
- EC-NUMBER
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- pantograph-esiliculosus
- IN-SILICO_ANNOTATION
Pathways
- PWY-7295, L-arabinose degradation IV: PWY-7295
- 3 reactions found over 8 reactions in the full pathway
- PWY-7294, xylose degradation IV: PWY-7294
- 2 reactions found over 7 reactions in the full pathway
- GLYOXDEG-PWY, glycolate and glyoxylate degradation II: GLYOXDEG-PWY
- 1 reactions found over 2 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 9 reactions found over 11 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 9 reactions found over 12 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 18 reactions in the full pathway
- PWY-7118, chitin degradation to ethanol: PWY-7118
- 4 reactions found over 6 reactions in the full pathway
Reconstruction information
External links
- RHEA:
- PIR:
- LIGAND-RXN:
- UNIPROT: