Difference between revisions of "Tiso gene 18472"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOATE-BETA-ALANINE-LIG-RXN PANTOATE-BETA-ALANINE-LIG-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13442 RXN-13442] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOATE-BETA-ALANINE-LIG-RXN PANTOATE-BETA-ALANINE-LIG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13442 RXN-13442] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ketopantoate_hydroxymethyltransferase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.2.1 EC-6.3.2.1]
+
** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-PANTOATE]][c] '''+''' 1 [[B-ALANINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PANTOTHENATE]][c]
+
** 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-14018]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14423]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (R)-pantoate[c] '''+''' 1 β-alanine[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 (R)-pantothenate[c]
+
** 1 malonyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 icosapentaenoyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-oxo-docosapentaenoyl-CoA[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_14466]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_14465]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[athaliana]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PANTO-PWY]], phosphopantothenate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PANTO-PWY PANTO-PWY]
+
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
 +
** '''14''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
 
−
** [[pantograph]]:
 
−
*** [[athaliana]]
 
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10912 10912]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02473 R02473]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P31663 P31663]
 
−
** [http://www.uniprot.org/uniprot/Q9PIK2 Q9PIK2]
 
−
** [http://www.uniprot.org/uniprot/P56061 P56061]
 
−
** [http://www.uniprot.org/uniprot/P57035 P57035]
 
−
** [http://www.uniprot.org/uniprot/Q9ZN52 Q9ZN52]
 
−
** [http://www.uniprot.org/uniprot/Q09673 Q09673]
 
−
** [http://www.uniprot.org/uniprot/O24210 O24210]
 
−
** [http://www.uniprot.org/uniprot/Q9X713 Q9X713]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ketopantoate_hydroxymethyltransferase}}
+
{{#set: ec number=EC-2.3.1}}
−
{{#set: ec number=EC-6.3.2.1}}
+
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
−
{{#set: gene associated=Tiso_gene_14466|Tiso_gene_14465}}
+
−
{{#set: in pathway=PANTO-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:29, 10 January 2018

Reaction RXN-13442

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18472&oldid=13158"