Difference between revisions of "PWY-6131"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATEDEHYDROG-RXN PREPHENATEDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [ht...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoglycolate_phosphatase_2...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATEDEHYDROG-RXN PREPHENATEDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** phosphoglycolate_phosphatase_2
 +
** phosphoglycolate_phosphatase
 +
** solute_carrier_family_38
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.12 EC-1.3.1.12]
+
** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[PREPHENATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-67]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GLYCOLLATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 prephenate[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 4-hydroxyphenylpyruvate[c]
+
** 1 H2O[c] '''+''' 1 2-phosphoglycolate[c] '''=>''' 1 phosphate[c] '''+''' 1 glycolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_18053]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18052]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_15498]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8723]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_18054]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7303]], 3-dimethylallyl-4-hydroxybenzoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7303 PWY-7303]
+
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[TYRSYN]], L-tyrosine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TYRSYN TYRSYN]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* [[orthology]]:
−
** [[primary_network]]
+
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13869 13869]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01728 R01728]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9CET9 Q9CET9]
+
** [http://www.uniprot.org/uniprot/P40852 P40852]
−
** [http://www.uniprot.org/uniprot/Q9PIZ7 Q9PIZ7]
+
** [http://www.uniprot.org/uniprot/P40853 P40853]
−
** [http://www.uniprot.org/uniprot/P43902 P43902]
+
** [http://www.uniprot.org/uniprot/P32662 P32662]
−
** [http://www.uniprot.org/uniprot/P07023 P07023]
+
** [http://www.uniprot.org/uniprot/P73525 P73525]
−
** [http://www.uniprot.org/uniprot/Q04983 Q04983]
+
** [http://www.uniprot.org/uniprot/O33512 O33512]
−
** [http://www.uniprot.org/uniprot/Q02287 Q02287]
+
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
−
** [http://www.uniprot.org/uniprot/P43901 P43901]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.3.1.12}}
+
{{#set: common name=phosphoglycolate_phosphatase_2}}
−
{{#set: in pathway=PWY-7303|TYRSYN}}
+
{{#set: common name=phosphoglycolate_phosphatase}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=solute_carrier_family_38}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: ec number=EC-3.1.3.18}}
 +
{{#set: gene associated=Tiso_gene_18053|Tiso_gene_18052|Tiso_gene_15498|Tiso_gene_8723|Tiso_gene_18054}}
 +
{{#set: in pathway=PWY-181}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:32, 10 January 2018

Reaction GPH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoglycolate_phosphatase_2
    • phosphoglycolate_phosphatase
    • solute_carrier_family_38
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 2-phosphoglycolate[c] => 1 phosphate[c] + 1 glycolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links







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