Difference between revisions of "PWY-7118"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-ALLANTOIN S-ALLANTOIN] == * smiles: ** C1(NC(N)=O)(NC(=O)NC(=O)1) * inchi key: ** InChIKey=PO...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-ALLANTOIN S-ALLANTOIN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
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* smiles:
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* direction:
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** C1(NC(N)=O)(NC(=O)NC(=O)1)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=POJWUDADGALRAB-SFOWXEAESA-N
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* common name:
 
* common name:
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** (S)-(+)-allantoin
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** ORF
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* molecular weight:
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** delta-1-pyrroline-5-carboxylate_synthase
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** 158.116   
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** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
 
* Synonym(s):
 
* Synonym(s):
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** S-allantoin
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ALLANTOINASE-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[GLT]][c]
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* [[RXN-6201]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 L-glutamate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7381]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18338]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3513]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_9680]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_18337]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16634]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_886]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_6952]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* BIGG : alltn
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=439714 439714]
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* LIGAND-RXN:
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* LIGAND-CPD:
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** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
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** [http://www.genome.jp/dbget-bin/www_bget?C02350 C02350]
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{{#set: direction=LEFT-TO-RIGHT}}
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* CHEMSPIDER:
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{{#set: common name=ORF}}
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** [http://www.chemspider.com/Chemical-Structure.388780.html 388780]
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{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
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* CHEBI:
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{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15678 15678]
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{{#set: ec number=EC-1.2.1.88}}
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* METABOLIGHTS : MTBLC15678
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{{#set: gene associated=Tiso_gene_7381|Tiso_gene_18338|Tiso_gene_3513|Tiso_gene_9680|Tiso_gene_18337|Tiso_gene_16634|Tiso_gene_886|Tiso_gene_6952}}
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{{#set: smiles=C1(NC(N)=O)(NC(=O)NC(=O)1)}}
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{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
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{{#set: inchi key=InChIKey=POJWUDADGALRAB-SFOWXEAESA-N}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=(S)-(+)-allantoin}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: molecular weight=158.116    }}
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{{#set: reconstruction source=synechocystis}}
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{{#set: common name=S-allantoin}}
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{{#set: reconstruction category=annotation}}
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{{#set: consumed by=ALLANTOINASE-RXN}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: produced by=RXN-6201}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:37, 10 January 2018

Reaction RXN-14116

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • delta-1-pyrroline-5-carboxylate_synthase
    • delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PROUT-PWY, L-proline degradation: PROUT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6853, ethylene biosynthesis II (microbes): PWY-6853
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7118&oldid=13842"