Difference between revisions of "RXN1K-87"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE-ALDOLASE-RXN THREONINE-ALDOLASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [ht...")
 
(Created page with "Category:Gene == Gene Tiso_gene_11974 == * left end position: ** 4520 * transcription direction: ** NEGATIVE * right end position: ** 6785 * centisome position: ** 61.1720...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE-ALDOLASE-RXN THREONINE-ALDOLASE-RXN] ==
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== Gene Tiso_gene_11974 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4520
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.1.2.48 EC-4.1.2.48]
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** NEGATIVE
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** [http://enzyme.expasy.org/EC/4.1.2.5 EC-4.1.2.5]
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* right end position:
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** 6785
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* centisome position:
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** 61.172016   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[PROLINE--TRNA-LIGASE-RXN]]
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** 1 [[THR]][c] '''=>''' 1 [[GLY]][c] '''+''' 1 [[ACETALD]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 L-threonine[c] '''=>''' 1 glycine[c] '''+''' 1 acetaldehyde[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[TRNA-CHARGING-PWY]]
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* [[Tiso_gene_13940]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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* [[GLYSYN-THR-PWY]], glycine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-THR-PWY GLYSYN-THR-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-5436]], L-threonine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5436 PWY-5436]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=4520}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19625 19625]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6785}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00751 R00751]
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{{#set: centisome position=61.172016    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=PROLINE--TRNA-LIGASE-RXN}}
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{{#set: ec number=EC-4.1.2.48}}
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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{{#set: ec number=EC-4.1.2.5}}
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{{#set: gene associated=Tiso_gene_13940}}
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{{#set: in pathway=GLYSYN-THR-PWY|PWY-5436}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus}}
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Revision as of 16:37, 10 January 2018

Gene Tiso_gene_11974

  • left end position:
    • 4520
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6785
  • centisome position:
    • 61.172016
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1K-87&oldid=13848"