Difference between revisions of "GLNSYN-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_20000 == * left end position: ** 60 * transcription direction: ** POSITIVE * right end position: ** 1742 * centisome position: ** 3.2258062...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16134 RXN-16134] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase * e...")
Line 1: Line 1:
[[Category:Gene]]
+
[[Category:Reaction]]
== Gene Tiso_gene_20000 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16134 RXN-16134] ==
* left end position:
+
* direction:
** 60
+
** LEFT-TO-RIGHT
* transcription direction:
+
* common name:
** POSITIVE
+
** acyl-coenzyme_a_oxidase
* right end position:
+
* ec number:
** 1742
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
* centisome position:
+
** 3.2258062   
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
+
== Reaction Formula ==
* [[1.2.1.13-RXN]]
+
* With identifiers:
** in-silico_annotation
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-17385]][c] '''=>''' 1 [[CPD-17386]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
***ec-number
+
* With common name(s):
** experimental_annotation
+
** 1 oxygen[c] '''+''' 1 (6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] '''=>''' 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
***ec-number
+
 
* [[GAPDHSYNEC-RXN]]
+
== Genes associated with this reaction  ==
** experimental_annotation
+
Genes have been associated with this reaction based on different elements listed below.
***automated-name-match
+
* [[Tiso_gene_18566]]
* [[GAPOXNPHOSPHN-RXN]]
+
** IN-SILICO_ANNOTATION
** [[pantograph]]-[[athaliana]]
+
***EC-NUMBER
** [[pantograph]]-[[athaliana]]
+
== Pathways  ==
** [[pantograph]]-[[synechocystis]]
+
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
** [[pantograph]]-[[esiliculosus]]
+
** '''14''' reactions found over '''14''' reactions in the full pathway
** [[pantograph]]-[[creinhardtii]]
+
== Reconstruction information  ==
** [[pantograph]]-[[creinhardtii]]
+
* [[annotation]]:
* [[TRIOSEPISOMERIZATION-RXN]]
+
** [[pathwaytools]]:
** [[pantograph]]-[[esiliculosus]]
+
*** [[experimental_annotation]]
== Pathways associated ==
+
*** [[in-silico_annotation]]
* [[PWY-1042]]
+
* [[P341-PWY]]
+
* [[PWY66-399]]
+
* [[PWY66-373]]
+
* [[GLUCONEO-PWY]]
+
* [[SUCSYN-PWY]]
+
* [[PWY-6901]]
+
* [[P124-PWY]]
+
* [[GLYCOLYSIS]]
+
* [[PWY-6142]]
+
* [[CALVIN-PWY]]
+
* [[ANAGLYCOLYSIS-PWY]]
+
* [[PWY-5484]]
+
* [[P185-PWY]]
+
* [[P122-PWY]]
+
* [[PWY-7003]]
+
 
== External links  ==
 
== External links  ==
{{#set: left end position=60}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: transcription direction=POSITIVE}}
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
{{#set: right end position=1742}}
+
{{#set: ec number=EC-1.3.3.6}}
{{#set: centisome position=3.2258062    }}
+
{{#set: gene associated=Tiso_gene_18566}}
{{#set: reaction associated=1.2.1.13-RXN|GAPDHSYNEC-RXN|GAPOXNPHOSPHN-RXN|TRIOSEPISOMERIZATION-RXN}}
+
{{#set: in pathway=PWY-7606}}
{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|GLUCONEO-PWY|SUCSYN-PWY|PWY-6901|P124-PWY|GLYCOLYSIS|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|P185-PWY|P122-PWY|PWY-7003}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:42, 10 January 2018

Reaction RXN-16134

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 oxygen[c] + 1 (6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] => 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] + 1 hydrogen peroxide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway

Reconstruction information

External links