Difference between revisions of "Tiso gene 92"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** 6-ph...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-2108 CPD0-2108] == * smiles: ** CCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-]...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-2108 CPD0-2108] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
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* inchi key:
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** InChIKey=CPSDNAXXKWVYIY-NTLMCJQISA-J
 
* common name:
 
* common name:
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** ORF
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** trans-oct-2-enoyl-CoA
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** 6-phosphogluconolactonase
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* molecular weight:
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* ec number:
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** 887.685   
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** [http://enzyme.expasy.org/EC/3.1.1.31 EC-3.1.1.31]
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* Synonym(s):
 
* Synonym(s):
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** (2E)-octenoyl-CoA
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** trans-2-octenoyl-coenzyme A
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-14276]]
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** 1 [[WATER]][c] '''+''' 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-2961]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-12669]]
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** 1 H2O[c] '''+''' 1 6-phospho D-glucono-1,5-lactone[c] '''=>''' 1 H+[c] '''+''' 1 D-gluconate 6-phosphate[c]
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* [[ACOA80or]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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* [[RXN-14229]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10799]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5901]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_15950]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_8585]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_20412]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I: [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and Entner-Doudoroff: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12556 12556]
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** [http://www.genome.jp/dbget-bin/www_bget?C05276 C05276]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R02035 R02035]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62242 62242]
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* UNIPROT:
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* BIGG : oc2coa
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** [http://www.uniprot.org/uniprot/P63337 P63337]
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46173358 46173358]
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{{#set: common name=ORF}}
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* HMDB : HMDB03949
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{{#set: common name=6-phosphogluconolactonase}}
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{{#set: smiles=CCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O}}
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{{#set: ec number=EC-3.1.1.31}}
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{{#set: inchi key=InChIKey=CPSDNAXXKWVYIY-NTLMCJQISA-J}}
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{{#set: gene associated=Tiso_gene_10799|Tiso_gene_5901|Tiso_gene_15950|Tiso_gene_8585|Tiso_gene_20412}}
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{{#set: common name=trans-oct-2-enoyl-CoA}}
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{{#set: in pathway=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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{{#set: molecular weight=887.685    }}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=(2E)-octenoyl-CoA|trans-2-octenoyl-coenzyme A}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: consumed by=RXN-14276}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: produced by=RXN-12669|ACOA80or}}
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{{#set: reconstruction category=manual}}
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{{#set: consumed or produced by=RXN-14229}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:46, 10 January 2018

Metabolite CPD0-2108

  • smiles:
    • CCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
  • inchi key:
    • InChIKey=CPSDNAXXKWVYIY-NTLMCJQISA-J
  • common name:
    • trans-oct-2-enoyl-CoA
  • molecular weight:
    • 887.685
  • Synonym(s):
    • (2E)-octenoyl-CoA
    • trans-2-octenoyl-coenzyme A

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O" cannot be used as a page name in this wiki.




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