Difference between revisions of "Tiso gene 20539"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] == * direction: ** REVERSIBLE * common name: ** ferredoxin-dependent_g...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13445 RXN-13445] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEHYD-RXN GLUTDEHYD-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
 +
** glutamate_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.93 EC-1.3.1.93]
+
** [http://enzyme.expasy.org/EC/1.4.1.4 EC-1.4.1.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Donor-H2]][c] '''+''' 1 [[CPD-14425]][c] '''=>''' 1 [[CPD-14426]][c] '''+''' 1 [[Acceptor]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a reduced electron acceptor[c] '''+''' 1 (2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA[c] '''=>''' 1 docosapentaenoyl-CoA[c] '''+''' 1 an oxidized electron acceptor[c]
+
** 1 H2O[c] '''+''' 1 L-glutamate[c] '''+''' 1 NADP+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 ammonium[c] '''+''' 1 NADPH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_2581]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11511]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1154]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
+
* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=GLUTSYNIII-PWY GLUTSYNIII-PWY]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
−
** '''14''' reactions found over '''14''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
+
* [[PWY-5675]], nitrate reduction V (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5675 PWY-5675]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[manual]]:
 +
** [[primary_network]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
Line 27: Line 48:
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: ec number=EC-1.3.1.93}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11612 11612]
−
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P07262 P07262]
 +
** [http://www.uniprot.org/uniprot/P15111 P15111]
 +
** [http://www.uniprot.org/uniprot/P28724 P28724]
 +
** [http://www.uniprot.org/uniprot/P43793 P43793]
 +
** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
 +
** [http://www.uniprot.org/uniprot/P00370 P00370]
 +
** [http://www.uniprot.org/uniprot/P00369 P00369]
 +
** [http://www.uniprot.org/uniprot/P29507 P29507]
 +
** [http://www.uniprot.org/uniprot/P28998 P28998]
 +
** [http://www.uniprot.org/uniprot/P29051 P29051]
 +
** [http://www.uniprot.org/uniprot/P31026 P31026]
 +
** [http://www.uniprot.org/uniprot/P39475 P39475]
 +
** [http://www.uniprot.org/uniprot/P39708 P39708]
 +
** [http://www.uniprot.org/uniprot/P54387 P54387]
 +
** [http://www.uniprot.org/uniprot/P54386 P54386]
 +
** [http://www.uniprot.org/uniprot/P95544 P95544]
 +
** [http://www.uniprot.org/uniprot/P78804 P78804]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
 +
{{#set: common name=glutamate_synthase}}
 +
{{#set: ec number=EC-1.4.1.4}}
 +
{{#set: gene associated=Tiso_gene_2581|Tiso_gene_11511|Tiso_gene_1154}}
 +
{{#set: in pathway=GLUTSYNIII-PWY|PWY-5913|PWY-5675|PWY490-3}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:46, 10 January 2018

Reaction GLUTDEHYD-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
    • glutamate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-glutamate[c] + 1 NADP+[c] <=> 1 2-oxoglutarate[c] + 1 H+[c] + 1 ammonium[c] + 1 NADPH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GLUTSYNIII-PWY, L-glutamate biosynthesis III: GLUTSYNIII-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-5675, nitrate reduction V (assimilatory): PWY-5675
    • 2 reactions found over 4 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory): PWY490-3
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20539&oldid=14566"