Difference between revisions of "CPD-4101"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIS5-ADENOSYL-TRIPHOSPHATASE-RXN BIS5-ADENOSYL-TRIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** acyl-_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIS5-ADENOSYL-TRIPHOSPHATASE-RXN BIS5-ADENOSYL-TRIPHOSPHATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** polyketide_synthase
 +
** acyl-_synthetase
 +
** long_chain_acyl-_synthetase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.29 EC-3.6.1.29]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ADENOSINE5TRIPHOSPHO5ADENOSINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 5',5'''-diadenosine triphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 AMP[c] '''+''' 2 H+[c] '''+''' 1 ADP[c]
+
** 1 a long-chain fatty acid[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 a long-chain acyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11617]]
+
* [[Tiso_gene_500]]
−
** [[pantograph]]-[[athaliana]]
+
** IN-SILICO_ANNOTATION
−
** [[pantograph]]-[[creinhardtii]]
+
***EC-NUMBER
−
* [[Tiso_gene_20047]]
+
* [[Tiso_gene_348]]
−
** [[pantograph]]-[[athaliana]]
+
** IN-SILICO_ANNOTATION
−
* [[Tiso_gene_8240]]
+
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** EXPERIMENTAL_ANNOTATION
−
* [[Tiso_gene_5129]]
+
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* [[Tiso_gene_4191]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_135]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_136]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7855]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10876]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[creinhardtii]]
+
*** [[esiliculosus]]
−
*** [[athaliana]]
+
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PIR:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13894 13894]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00187 R00187]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O60135 O60135]
 +
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 +
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 +
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 +
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 +
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 +
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 +
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 +
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 +
** [http://www.uniprot.org/uniprot/O15840 O15840]
 +
** [http://www.uniprot.org/uniprot/O81614 O81614]
 +
** [http://www.uniprot.org/uniprot/P73004 P73004]
 +
** [http://www.uniprot.org/uniprot/P47912 P47912]
 +
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 +
** [http://www.uniprot.org/uniprot/P69452 P69452]
 +
** [http://www.uniprot.org/uniprot/P69451 P69451]
 +
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 +
** [http://www.uniprot.org/uniprot/P30624 P30624]
 +
** [http://www.uniprot.org/uniprot/P33124 P33124]
 +
** [http://www.uniprot.org/uniprot/P33121 P33121]
 +
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 +
** [http://www.uniprot.org/uniprot/O51539 O51539]
 +
** [http://www.uniprot.org/uniprot/O30039 O30039]
 +
** [http://www.uniprot.org/uniprot/P44446 P44446]
 +
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 +
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 +
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 +
** [http://www.uniprot.org/uniprot/P94547 P94547]
 +
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 +
** [http://www.uniprot.org/uniprot/O83181 O83181]
 +
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 +
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 +
** [http://www.uniprot.org/uniprot/P39002 P39002]
 +
** [http://www.uniprot.org/uniprot/O51162 O51162]
 +
** [http://www.uniprot.org/uniprot/P39518 P39518]
 +
** [http://www.uniprot.org/uniprot/P18163 P18163]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.6.1.29}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: gene associated=Tiso_gene_11617|Tiso_gene_20047|Tiso_gene_8240|Tiso_gene_5129}}
+
{{#set: common name=acyl-_synthetase}}
−
{{#set: in pathway=}}
+
{{#set: common name=long_chain_acyl-_synthetase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_500|Tiso_gene_348|Tiso_gene_4191|Tiso_gene_135|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_10876}}
 +
{{#set: in pathway=PWY-5143|PWY-6803|PWY-6873|PWY-7033|PWY-5885}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|athaliana}}
+
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:47, 10 January 2018

Reaction RXN-7904

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • acyl-_synthetase
    • long_chain_acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5143, long-chain fatty acid activation: PWY-5143
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6803, phosphatidylcholine acyl editing: PWY-6803
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6873, long chain fatty acid ester synthesis (engineered): PWY-6873
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7033, alkane biosynthesis II: PWY-7033
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5885, wax esters biosynthesis II: PWY-5885
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links








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