Difference between revisions of "HOMOCYSMET-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LINOLENOYL-RXN LINOLENOYL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** long_chain_acyl-_...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MET MET] == * smiles: ** CSCCC([N+])C([O-])=O * inchi key: ** InChIKey=FFEARJCKVFRZRR-BYPYZUCNS...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LINOLENOYL-RXN LINOLENOYL-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MET MET] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CSCCC([N+])C([O-])=O
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* inchi key:
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** InChIKey=FFEARJCKVFRZRR-BYPYZUCNSA-N
 
* common name:
 
* common name:
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** long_chain_acyl-_synthetase
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** L-methionine
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** polyketide_synthase
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* molecular weight:
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** acyl-_synthetase
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** 149.207   
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
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** M
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** met
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** methionine
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** L-met
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-16165]]
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** 1 [[CO-A]][c] '''+''' 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[LINOLENOYL-COA]][c] '''+''' 1 [[AMP]][c]
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* [[RXN0-6948]]
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* With common name(s):
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* [[S-ADENMETSYN-RXN]]
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** 1 coenzyme A[c] '''+''' 1 α-linolenate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 α-linolenoyl-CoA[c] '''+''' 1 AMP[c]
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* [[RME144]]
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* [[METHIONINE--TRNA-LIGASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) known to produce the compound ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN0-5063]]
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* [[Tiso_gene_9394]]
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* [[R00946]]
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** IN-SILICO_ANNOTATION
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* [[RXN-8340]]
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***EC-NUMBER
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* [[3.4.11.18-RXN]]
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** EXPERIMENTAL_ANNOTATION
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* [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]]
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***EC-NUMBER
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* [[RXN0-949]]
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** [[pantograph]]-[[esiliculosus]]
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* [[2.8.1.6-RXN]]
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* [[Tiso_gene_4191]]
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* [[RXN-14950]]
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** IN-SILICO_ANNOTATION
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* [[RXN-14957]]
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***EC-NUMBER
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* [[RXN-14959]]
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** EXPERIMENTAL_ANNOTATION
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* [[HEMN-RXN]]
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***EC-NUMBER
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* [[HOMOCYSMETB12-RXN]]
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* [[Tiso_gene_348]]
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* [[1.8.4.14-RXN]]
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** IN-SILICO_ANNOTATION
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* [[RXN-17473]]
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***EC-NUMBER
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* [[RXN-17472]]
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** EXPERIMENTAL_ANNOTATION
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* [[MMUM-RXN]]
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***EC-NUMBER
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* [[RXN0-1342]]
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* [[Tiso_gene_500]]
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* [[FORMYLMETHIONINE-DEFORMYLASE-RXN]]
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** IN-SILICO_ANNOTATION
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* [[RXN-17878]]
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***EC-NUMBER
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* [[RXN-17873]]
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* [[Tiso_gene_136]]
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* [[RXN-17877]]
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** IN-SILICO_ANNOTATION
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* [[RXN-17876]]
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***EC-NUMBER
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* [[RXN-17875]]
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* [[Tiso_gene_7855]]
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* [[RXN-17874]]
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** IN-SILICO_ANNOTATION
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* [[RXN-14480]]
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***EC-NUMBER
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== Reaction(s) of unknown directionality ==
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* [[Tiso_gene_135]]
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* [[HOMOCYSMET-RXN]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7049]], icosapentaenoate biosynthesis II (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7049 PWY-7049]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* CAS : 63-68-3
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{{#set: common name=long_chain_acyl-_synthetase}}
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* METABOLIGHTS : MTBLC57844
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{{#set: common name=polyketide_synthase}}
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* PUBCHEM:
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{{#set: common name=acyl-_synthetase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6992087 6992087]
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{{#set: common name=ORF}}
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* HMDB : HMDB00696
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{{#set: ec number=EC-6.2.1.3}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_348|Tiso_gene_500|Tiso_gene_136|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_10876}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00073 C00073]
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{{#set: in pathway=PWY-7049|PWY-7724}}
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* CHEBI:
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{{#set: reconstruction category=orthology}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57844 57844]
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{{#set: reconstruction tool=pantograph}}
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* BIGG : met__L
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{{#set: reconstruction source=esiliculosus}}
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{{#set: smiles=CSCCC([N+])C([O-])=O}}
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{{#set: reconstruction category=annotation}}
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{{#set: inchi key=InChIKey=FFEARJCKVFRZRR-BYPYZUCNSA-N}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=L-methionine}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: molecular weight=149.207    }}
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{{#set: common name=M|met|methionine|L-met}}
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{{#set: consumed by=RXN-16165|RXN0-6948|S-ADENMETSYN-RXN|RME144|METHIONINE--TRNA-LIGASE-RXN}}
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{{#set: produced by=RXN0-5063|R00946|RXN-8340|3.4.11.18-RXN|HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN|RXN0-949|2.8.1.6-RXN|RXN-14950|RXN-14957|RXN-14959|HEMN-RXN|HOMOCYSMETB12-RXN|1.8.4.14-RXN|RXN-17473|RXN-17472|MMUM-RXN|RXN0-1342|FORMYLMETHIONINE-DEFORMYLASE-RXN|RXN-17878|RXN-17873|RXN-17877|RXN-17876|RXN-17875|RXN-17874|RXN-14480}}
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{{#set: consumed or produced by=HOMOCYSMET-RXN}}

Revision as of 16:50, 10 January 2018

Metabolite MET

  • smiles:
    • CSCCC([N+])C([O-])=O
  • inchi key:
    • InChIKey=FFEARJCKVFRZRR-BYPYZUCNSA-N
  • common name:
    • L-methionine
  • molecular weight:
    • 149.207
  • Synonym(s):
    • M
    • met
    • methionine
    • L-met

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

  • HOMOCYSMET-RXN

External links

  • CAS : 63-68-3
  • METABOLIGHTS : MTBLC57844
  • PUBCHEM:
  • HMDB : HMDB00696
  • LIGAND-CPD:
  • CHEBI:
  • BIGG : met__L
"CSCCC([N+])C([O-])=O" cannot be used as a page name in this wiki.




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