Difference between revisions of "DCMP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXAMINE PYRIDOXAMINE] == * smiles: ** CC1(=NC=C(CO)C(C[N+])=C(O)1) * inchi key: ** InChIKe...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXAMINE PYRIDOXAMINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC1(=NC=C(CO)C(C[N+])=C(O)1)
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* inchi key:
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** InChIKey=NHZMQXZHNVQTQA-UHFFFAOYSA-O
 
* common name:
 
* common name:
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** ORF
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** pyridoxamine
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** adenylate_kinase_domain-containing_protein_1
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* molecular weight:
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** nucleoside_diphosphate_kinase
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** 169.203   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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* Synonym(s):
 
* Synonym(s):
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** PM
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[PYRAMKIN-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[DATP]][c] '''+''' 1 [[ADP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[PYAMPP]]
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** 1 ATP[c] '''+''' 1 dADP[c] '''=>''' 1 dATP[c] '''+''' 1 ADP[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17271]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9290]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18224]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16529]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17272]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_195]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 85-87-0
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
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* METABOLIGHTS : MTBLC57761
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245492 25245492]
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{{#set: direction=LEFT-TO-RIGHT}}
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* HMDB : HMDB01431
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{{#set: common name=ORF}}
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* LIGAND-CPD:
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00534 C00534]
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{{#set: common name=nucleoside_diphosphate_kinase}}
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* CHEBI:
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{{#set: ec number=EC-2.7.4.6}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57761 57761]
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{{#set: gene associated=Tiso_gene_17271|Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_16529|Tiso_gene_17272|Tiso_gene_195}}
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* BIGG : pydam
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{{#set: in pathway=PWY-7220|PWY-7224|PWY-7227}}
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{{#set: smiles=CC1(=NC=C(CO)C(C[N+])=C(O)1)}}
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{{#set: reconstruction category=orthology}}
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{{#set: inchi key=InChIKey=NHZMQXZHNVQTQA-UHFFFAOYSA-O}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=pyridoxamine}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: molecular weight=169.203    }}
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{{#set: reconstruction category=manual}}
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{{#set: common name=PM}}
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{{#set: reconstruction source=primary_network}}
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{{#set: consumed by=PYRAMKIN-RXN}}
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{{#set: reconstruction category=annotation}}
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{{#set: produced by=PYAMPP}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:51, 10 January 2018

Metabolite PYRIDOXAMINE

  • smiles:
    • CC1(=NC=C(CO)C(C[N+])=C(O)1)
  • inchi key:
    • InChIKey=NHZMQXZHNVQTQA-UHFFFAOYSA-O
  • common name:
    • pyridoxamine
  • molecular weight:
    • 169.203
  • Synonym(s):
    • PM

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 85-87-0
  • METABOLIGHTS : MTBLC57761
  • PUBCHEM:
  • HMDB : HMDB01431
  • LIGAND-CPD:
  • CHEBI:
  • BIGG : pydam
"CC1(=NC=C(CO)C(C[N+])=C(O)1)" cannot be used as a page name in this wiki.




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