Difference between revisions of "Tiso gene 5194"

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(Created page with "Category:Gene == Gene Tiso_gene_3260 == * left end position: ** 10034 * transcription direction: ** NEGATIVE * right end position: ** 11548 * centisome position: ** 58.520...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN] == * direction: ** LEFT-TO-R...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3260 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN] ==
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* left end position:
+
* direction:
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** 10034
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** NEGATIVE
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** [http://enzyme.expasy.org/EC/3.6.1 EC-3.6.1]
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* right end position:
+
−
** 11548
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−
* centisome position:
+
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** 58.520935   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.2.1.25-RXN]]
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* With identifiers:
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** experimental_annotation
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** 1 [[WATER]][c] '''+''' 1 [[DIHYDRONEOPTERIN-P]][c] '''=>''' 1 [[DIHYDRO-NEO-PTERIN]][c] '''+''' 1 [[Pi]][c]
−
***automated-name-match
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* With common name(s):
−
* [[1.2.4.4-RXN]]
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** 1 H2O[c] '''+''' 1 7,8-dihydroneopterin 3'-phosphate[c] '''=>''' 1 7,8-dihydroneopterin[c] '''+''' 1 phosphate[c]
−
** in-silico_annotation
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−
***ec-number
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== Genes associated with this reaction  ==
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** experimental_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* [[Tiso_gene_6277]]
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* [[2.3.1.168-RXN]]
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** [[pantograph]]-[[athaliana]]
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** experimental_annotation
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** [[pantograph]]-[[esiliculosus]]
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***automated-name-match
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* [[Tiso_gene_2924]]
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* [[2KETO-3METHYLVALERATE-RXN]]
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** [[pantograph]]-[[athaliana]]
−
** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
−
* [[KETOISOCAPROATE-RXN]]
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* [[Tiso_gene_8599]]
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** in-silico_annotation
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** [[pantograph]]-[[esiliculosus]]
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***ec-number
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* [[Tiso_gene_7067]]
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** experimental_annotation
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** [[pantograph]]-[[athaliana]]
−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
−
* [[METHYLVALERATE-RXN]]
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* [[Tiso_gene_1142]]
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** in-silico_annotation
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** [[pantograph]]-[[esiliculosus]]
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***ec-number
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* [[Tiso_gene_13604]]
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** experimental_annotation
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** [[pantograph]]-[[esiliculosus]]
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***ec-number
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* [[Tiso_gene_11387]]
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* [[RXN-7719]]
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** [[pantograph]]-[[athaliana]]
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** experimental_annotation
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* [[Tiso_gene_15582]]
−
***automated-name-match
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** [[pantograph]]-[[esiliculosus]]
−
== Pathways associated ==
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* [[Tiso_gene_3667]]
−
* [[PWY-5046]]
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** [[pantograph]]-[[esiliculosus]]
−
* [[VALDEG-PWY]]
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* [[Tiso_gene_4112]]
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* [[ILEUDEG-PWY]]
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** [[pantograph]]-[[athaliana]]
−
* [[PWY-5108]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2747]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_3314]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4645]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16712]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17467]]
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** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_43]]
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** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16176]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_12636]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8601]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_14428]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_13729]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_10158]]
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** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_19075]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_6144]]
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** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_15988]]
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** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_6767]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13847]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10288]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1799]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8600]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13784]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18343]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17804]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10760]]
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** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_277]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2019]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12514]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5713]]
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** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=10034}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25306 25306]
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{{#set: right end position=11548}}
+
* LIGAND-RXN:
−
{{#set: centisome position=58.520935    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R04621 R04621]
−
{{#set: reaction associated=1.2.1.25-RXN|1.2.4.4-RXN|2.3.1.168-RXN|2KETO-3METHYLVALERATE-RXN|KETOISOCAPROATE-RXN|METHYLVALERATE-RXN|RXN-7719}}
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{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-5046|VALDEG-PWY|ILEUDEG-PWY|PWY-5108}}
+
{{#set: ec number=EC-3.6.1}}
 +
{{#set: gene associated=Tiso_gene_6277|Tiso_gene_2924|Tiso_gene_8599|Tiso_gene_7067|Tiso_gene_1142|Tiso_gene_13604|Tiso_gene_11387|Tiso_gene_15582|Tiso_gene_3667|Tiso_gene_4112|Tiso_gene_2747|Tiso_gene_3314|Tiso_gene_4645|Tiso_gene_16712|Tiso_gene_17467|Tiso_gene_43|Tiso_gene_16176|Tiso_gene_12636|Tiso_gene_8601|Tiso_gene_14428|Tiso_gene_13729|Tiso_gene_10158|Tiso_gene_19075|Tiso_gene_6144|Tiso_gene_15988|Tiso_gene_6767|Tiso_gene_13847|Tiso_gene_10288|Tiso_gene_1799|Tiso_gene_8600|Tiso_gene_13784|Tiso_gene_18343|Tiso_gene_17804|Tiso_gene_10760|Tiso_gene_277|Tiso_gene_2019|Tiso_gene_12514|Tiso_gene_5713}}
 +
{{#set: in pathway=PWY-7539|PWY-6797|PWY-6147}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}

Revision as of 16:51, 10 January 2018

Reaction DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6797, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6147, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: PWY-6147
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5194&oldid=14925"