Difference between revisions of "ITUP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DHBDEHYD-RXN DHBDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:Gene == Gene Tiso_gene_12496 == * left end position: ** 27 * transcription direction: ** NEGATIVE * right end position: ** 4124 * centisome position: ** 0.3888808...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DHBDEHYD-RXN DHBDEHYD-RXN] ==
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== Gene Tiso_gene_12496 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 27
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.3.1.28 EC-1.3.1.28]
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** NEGATIVE
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* right end position:
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** 4124
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* centisome position:
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** 0.38888088   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[DIHYDRO-DIOH-BENZOATE]][c] '''=>''' 1 [[2-3-DIHYDROXYBENZOATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 NAD+[c] '''+''' 1 (2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate[c] '''=>''' 1 2,3-dihydroxybenzoate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8022]]
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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== Pathways associated ==
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* [[PWY-5901]], 2,3-dihydroxybenzoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5901 PWY-5901]
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* [[TRNA-CHARGING-PWY]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=27}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23824 23824]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=4124}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01505 R01505]
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{{#set: centisome position=0.38888088    }}
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* UNIPROT:
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{{#set: reaction associated=ISOLEUCINE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P39071 P39071]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/P15047 P15047]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.3.1.28}}
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{{#set: gene associated=Tiso_gene_8022}}
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{{#set: in pathway=PWY-5901}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Revision as of 17:52, 10 January 2018

Gene Tiso_gene_12496

  • left end position:
    • 27
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 4124
  • centisome position:
    • 0.38888088
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ITUP&oldid=15015"