Difference between revisions of "RXN-12626"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_14398 == * left end position: ** 9687 * transcription direction: ** NEGATIVE * right end position: ** 12413 * centisome position: ** 78.039...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_rna_helicase_...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_14398 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
−
* left end position:
+
* direction:
−
** 9687
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** atp-dependent_rna_helicase_ded1
−
* right end position:
+
** rna_helicase
−
** 12413
+
** dead_box_rna_helicase
−
* centisome position:
+
** ORF
−
** 78.039154   
+
** dead_box_helicase
 +
** atp-dependent_rna_helicase-like_protein_db10
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[KYNURENINE-3-MONOOXYGENASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[WATER]][c] '''+''' 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Unwound-RNA]][c]
−
***automated-name-match
+
* With common name(s):
 +
** 1 H2O[c] '''+''' 1 wound RNA[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an unwound RNA[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_5272]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17819]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11551]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_13864]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13863]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17804]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14774]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15465]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
== Pathways associated ==
+
* [[Tiso_gene_13862]]
−
* [[PWY-7765]]
+
** IN-SILICO_ANNOTATION
−
* [[PWY-5651]]
+
***EC-NUMBER
−
* [[PWY-6309]]
+
** EXPERIMENTAL_ANNOTATION
−
* [[PWY-7717]]
+
***EC-NUMBER
 +
* [[Tiso_gene_9370]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=9687}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=NEGATIVE}}
+
{{#set: common name=atp-dependent_rna_helicase_ded1}}
−
{{#set: right end position=12413}}
+
{{#set: common name=rna_helicase}}
−
{{#set: centisome position=78.039154    }}
+
{{#set: common name=dead_box_rna_helicase}}
−
{{#set: reaction associated=KYNURENINE-3-MONOOXYGENASE-RXN}}
+
{{#set: common name=ORF}}
−
{{#set: pathway associated=PWY-7765|PWY-5651|PWY-6309|PWY-7717}}
+
{{#set: common name=dead_box_helicase}}
 +
{{#set: common name=atp-dependent_rna_helicase-like_protein_db10}}
 +
{{#set: ec number=EC-3.6.4.13}}
 +
{{#set: gene associated=Tiso_gene_5272|Tiso_gene_17819|Tiso_gene_11551|Tiso_gene_13864|Tiso_gene_13863|Tiso_gene_17804|Tiso_gene_14774|Tiso_gene_15465|Tiso_gene_13862|Tiso_gene_9370}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:55, 10 January 2018

Reaction RXN-11109

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • atp-dependent_rna_helicase_ded1
    • rna_helicase
    • dead_box_rna_helicase
    • ORF
    • dead_box_helicase
    • atp-dependent_rna_helicase-like_protein_db10
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 wound RNA[c] + 1 ATP[c] => 1 H+[c] + 1 phosphate[c] + 1 ADP[c] + 1 an unwound RNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12626&oldid=15297"