Difference between revisions of "Tiso gene 16915"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYRISTOYLACYLTRAN-RXN MYRISTOYLACYLTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** lip...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SECOLOGANIN-CPD SECOLOGANIN-CPD] == * smiles: ** C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYRISTOYLACYLTRAN-RXN MYRISTOYLACYLTRAN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SECOLOGANIN-CPD SECOLOGANIN-CPD] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))
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* inchi key:
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** InChIKey=CSKKDSFETGLMSB-NRZPKYKESA-N
 
* common name:
 
* common name:
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** lipid_a_biosynthesis_acyltransferase
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** secologanin
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.1.243 EC-2.3.1.243]
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** 388.371   
 
* Synonym(s):
 
* Synonym(s):
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** (-)-secologanin
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[STRICTOSIDINE-SYNTHASE-RXN]]
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** 1 [[KDO2-LAUROYL-LIPID-IVA]][c] '''+''' 1 [[Myristoyl-ACPs]][c] '''=>''' 1 [[KDO2-LIPID-A]][c] '''+''' 1 [[ACP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 α-Kdo-(2->4)-α-Kdo-(2->6)-(lauroyl)-lipid IVA[c] '''+''' 1 a myristoyl-[acp][c] '''=>''' 1 α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A[c] '''+''' 1 a holo-[acyl-carrier protein][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14060]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5065]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[KDO-NAGLIPASYN-PWY]], superpathway of (Kdo)2-lipid A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=KDO-NAGLIPASYN-PWY KDO-NAGLIPASYN-PWY]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[KDO-LIPASYN-PWY]], (Kdo)2-lipid A biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=KDO-LIPASYN-PWY KDO-LIPASYN-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIPID_MAPS : LMPR0102070002
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28438 28438]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=161276 161276]
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** [http://www.genome.jp/dbget-bin/www_bget?R05075 R05075]
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* CHEMSPIDER:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.chemspider.com/Chemical-Structure.141670.html 141670]
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{{#set: common name=lipid_a_biosynthesis_acyltransferase}}
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* CHEBI:
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{{#set: ec number=EC-2.3.1.243}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=18002 18002]
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{{#set: gene associated=Tiso_gene_14060|Tiso_gene_5065}}
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* LIGAND-CPD:
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{{#set: in pathway=KDO-NAGLIPASYN-PWY|KDO-LIPASYN-PWY}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01852 C01852]
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{{#set: reconstruction category=annotation}}
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{{#set: smiles=C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=CSKKDSFETGLMSB-NRZPKYKESA-N}}
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{{#set: reconstruction source=in-silico_annotation}}
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{{#set: common name=secologanin}}
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{{#set: molecular weight=388.371    }}
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{{#set: common name=(-)-secologanin}}
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{{#set: consumed by=STRICTOSIDINE-SYNTHASE-RXN}}

Revision as of 17:59, 10 January 2018

Metabolite SECOLOGANIN-CPD

  • smiles:
    • C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))
  • inchi key:
    • InChIKey=CSKKDSFETGLMSB-NRZPKYKESA-N
  • common name:
    • secologanin
  • molecular weight:
    • 388.371
  • Synonym(s):
    • (-)-secologanin

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))" cannot be used as a page name in this wiki.



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