Difference between revisions of "Tiso gene 16915"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYRISTOYLACYLTRAN-RXN MYRISTOYLACYLTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** lip...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SECOLOGANIN-CPD SECOLOGANIN-CPD] == * smiles: ** C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYRISTOYLACYLTRAN-RXN MYRISTOYLACYLTRAN-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SECOLOGANIN-CPD SECOLOGANIN-CPD] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))
 +
* inchi key:
 +
** InChIKey=CSKKDSFETGLMSB-NRZPKYKESA-N
 
* common name:
 
* common name:
−
** lipid_a_biosynthesis_acyltransferase
+
** secologanin
−
* ec number:
+
* molecular weight:
−
** [http://enzyme.expasy.org/EC/2.3.1.243 EC-2.3.1.243]
+
** 388.371   
 
* Synonym(s):
 
* Synonym(s):
 +
** (-)-secologanin
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[STRICTOSIDINE-SYNTHASE-RXN]]
−
** 1 [[KDO2-LAUROYL-LIPID-IVA]][c] '''+''' 1 [[Myristoyl-ACPs]][c] '''=>''' 1 [[KDO2-LIPID-A]][c] '''+''' 1 [[ACP]][c]
+
== Reaction(s) known to produce the compound ==
−
* With common name(s):
+
== Reaction(s) of unknown directionality ==
−
** 1 α-Kdo-(2->4)-α-Kdo-(2->6)-(lauroyl)-lipid IVA[c] '''+''' 1 a myristoyl-[acp][c] '''=>''' 1 α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A[c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_14060]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_5065]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
* [[KDO-NAGLIPASYN-PWY]], superpathway of (Kdo)2-lipid A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=KDO-NAGLIPASYN-PWY KDO-NAGLIPASYN-PWY]
+
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
−
* [[KDO-LIPASYN-PWY]], (Kdo)2-lipid A biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=KDO-LIPASYN-PWY KDO-LIPASYN-PWY]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIPID_MAPS : LMPR0102070002
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28438 28438]
+
* PUBCHEM:
−
* LIGAND-RXN:
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=161276 161276]
−
** [http://www.genome.jp/dbget-bin/www_bget?R05075 R05075]
+
* CHEMSPIDER:
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.chemspider.com/Chemical-Structure.141670.html 141670]
−
{{#set: common name=lipid_a_biosynthesis_acyltransferase}}
+
* CHEBI:
−
{{#set: ec number=EC-2.3.1.243}}
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=18002 18002]
−
{{#set: gene associated=Tiso_gene_14060|Tiso_gene_5065}}
+
* LIGAND-CPD:
−
{{#set: in pathway=KDO-NAGLIPASYN-PWY|KDO-LIPASYN-PWY}}
+
** [http://www.genome.jp/dbget-bin/www_bget?C01852 C01852]
−
{{#set: reconstruction category=annotation}}
+
{{#set: smiles=C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: inchi key=InChIKey=CSKKDSFETGLMSB-NRZPKYKESA-N}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: common name=secologanin}}
 +
{{#set: molecular weight=388.371    }}
 +
{{#set: common name=(-)-secologanin}}
 +
{{#set: consumed by=STRICTOSIDINE-SYNTHASE-RXN}}

Revision as of 16:59, 10 January 2018

Metabolite SECOLOGANIN-CPD

  • smiles:
    • C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))
  • inchi key:
    • InChIKey=CSKKDSFETGLMSB-NRZPKYKESA-N
  • common name:
    • secologanin
  • molecular weight:
    • 388.371
  • Synonym(s):
    • (-)-secologanin

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C=C[CH]1(C(OC=C(C(=O)OC)[CH](CC=O)1)OC2(OC(CO)C(O)C(O)C(O)2))" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16915&oldid=15541"