Difference between revisions of "CPD-5821"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF...")
 
(Created page with "Category:Gene == Gene Tiso_gene_17798 == * left end position: ** 721 * transcription direction: ** POSITIVE * right end position: ** 2318 * centisome position: ** 20.88644...")
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16418 RXN-16418] ==
+
== Gene Tiso_gene_17798 ==
* direction:
+
* left end position:
** LEFT-TO-RIGHT
+
** 721
* common name:
+
* transcription direction:
** polyketide_synthase
+
** POSITIVE
** ORF
+
* right end position:
** long_chain_acyl-_synthetase
+
** 2318
** acyl-_synthetase
+
* centisome position:
* ec number:
+
** 20.886442   
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reactions associated ==
* With identifiers:
+
* [[RXN-10058]]
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[OCTADEC-9-ENE-118-DIOIC-ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-17624]][c] '''+''' 1 [[PPI]][c]
+
** in-silico_annotation
* With common name(s):
+
***automated-name-match
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 α,ω-9Z-octadecenedioate[c] '''=>''' 1 AMP[c] '''+''' 1 ω-carboxy-(9Z)-octadec-9-enoyl-CoA[c] '''+''' 1 diphosphate[c]
+
* [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
 
+
** in-silico_annotation
== Genes associated with this reaction  ==
+
***ec-number
Genes have been associated with this reaction based on different elements listed below.
+
== Pathways associated ==
* [[Tiso_gene_135]]
+
* [[PWY-6167]]
** IN-SILICO_ANNOTATION
+
* [[PWY-6168]]
***EC-NUMBER
+
* [[Tiso_gene_7855]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_4191]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_13394]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_500]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_348]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_10876]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_136]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_9394]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
== Pathways ==
+
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
+
** '''9''' reactions found over '''19''' reactions in the full pathway
+
== Reconstruction information  ==
+
* [[annotation]]:
+
** [[pathwaytools]]:
+
*** [[experimental_annotation]]
+
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=721}}
{{#set: common name=polyketide_synthase}}
+
{{#set: transcription direction=POSITIVE}}
{{#set: common name=ORF}}
+
{{#set: right end position=2318}}
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: centisome position=20.886442    }}
{{#set: common name=acyl-_synthetase}}
+
{{#set: reaction associated=RXN-10058|TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: pathway associated=PWY-6167|PWY-6168}}
{{#set: gene associated=Tiso_gene_135|Tiso_gene_7855|Tiso_gene_4191|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_348|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_9394}}
+
{{#set: in pathway=PWY-1121}}
+
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 17:59, 10 January 2018

Gene Tiso_gene_17798

  • left end position:
    • 721
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2318
  • centisome position:
    • 20.886442
  • Synonym(s):

Reactions associated

Pathways associated

External links