Difference between revisions of "CPD0-181"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMO-CIT HOMO-CIT] == * smiles: ** C(C([O-])=O)CC(O)(C([O-])=O)CC([O-])=O * inchi key: ** InChI...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMO-CIT HOMO-CIT] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(C([O-])=O)CC(O)(C([O-])=O)CC([O-])=O
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* inchi key:
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** InChIKey=XKJVEVRQMLKSMO-SSDOTTSWSA-K
 
* common name:
 
* common name:
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** hydroxymethylbilane_synthase
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** (2R)-homocitrate
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** uroporphyrinogen_synthase
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* molecular weight:
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* ec number:
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** 203.128   
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** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
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* Synonym(s):
 
* Synonym(s):
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** 2-hydroxybutane-1,2,4-tricarboxylate
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** homocitric acid
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** 3-hydroxy-3-carboxyadipic acid
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** (2R)-2-hydroxybutane-1,2,4-tricarboxylate
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** (R)-2-hydroxybutane-1,2,4-tricarboxylate
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** homocitrate
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** (R)-homocitrate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 4 [[PORPHOBILINOGEN]][c] '''=>''' 1 [[HYDROXYMETHYLBILANE]][c] '''+''' 4 [[AMMONIUM]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-13722]]
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** 1 H2O[c] '''+''' 4 porphobilinogen[c] '''=>''' 1 preuroporphyrinogen[c] '''+''' 4 ammonium[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14709]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_11630]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 3562-74-1
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=20849228 20849228]
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** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
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* HMDB : HMDB03518
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q57989 Q57989]
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** [http://www.genome.jp/dbget-bin/www_bget?C01251 C01251]
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** [http://www.uniprot.org/uniprot/O29026 O29026]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P64336 P64336]
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** [http://www.chemspider.com/Chemical-Structure.20171681.html 20171681]
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** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58884 58884]
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** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
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{{#set: smiles=C(C([O-])=O)CC(O)(C([O-])=O)CC([O-])=O}}
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** [http://www.uniprot.org/uniprot/P28464 P28464]
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{{#set: inchi key=InChIKey=XKJVEVRQMLKSMO-SSDOTTSWSA-K}}
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** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
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{{#set: common name=(2R)-homocitrate}}
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** [http://www.uniprot.org/uniprot/P56140 P56140]
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{{#set: molecular weight=203.128    }}
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** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
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{{#set: common name=2-hydroxybutane-1,2,4-tricarboxylate|homocitric acid|3-hydroxy-3-carboxyadipic acid|(2R)-2-hydroxybutane-1,2,4-tricarboxylate|(R)-2-hydroxybutane-1,2,4-tricarboxylate|homocitrate|(R)-homocitrate}}
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** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
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{{#set: consumed or produced by=RXN-13722}}
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** [http://www.uniprot.org/uniprot/O26960 O26960]
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** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
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** [http://www.uniprot.org/uniprot/P06983 P06983]
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** [http://www.uniprot.org/uniprot/P13446 P13446]
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** [http://www.uniprot.org/uniprot/P08397 P08397]
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** [http://www.uniprot.org/uniprot/P22907 P22907]
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** [http://www.uniprot.org/uniprot/P19356 P19356]
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** [http://www.uniprot.org/uniprot/Q43082 Q43082]
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** [http://www.uniprot.org/uniprot/P40129 P40129]
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** [http://www.uniprot.org/uniprot/P30527 P30527]
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** [http://www.uniprot.org/uniprot/P28789 P28789]
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** [http://www.uniprot.org/uniprot/Q60169 Q60169]
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** [http://www.uniprot.org/uniprot/Q43316 Q43316]
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** [http://www.uniprot.org/uniprot/Q49808 Q49808]
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** [http://www.uniprot.org/uniprot/P73660 P73660]
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** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
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** [http://www.uniprot.org/uniprot/Q09899 Q09899]
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** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=hydroxymethylbilane_synthase}}
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{{#set: common name=uroporphyrinogen_synthase}}
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{{#set: ec number=EC-2.5.1.61}}
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{{#set: gene associated=Tiso_gene_14709|Tiso_gene_11630}}
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{{#set: in pathway=PWY-5189|PWY-5188}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:01, 10 January 2018

Metabolite HOMO-CIT

  • smiles:
    • C(C([O-])=O)CC(O)(C([O-])=O)CC([O-])=O
  • inchi key:
    • InChIKey=XKJVEVRQMLKSMO-SSDOTTSWSA-K
  • common name:
    • (2R)-homocitrate
  • molecular weight:
    • 203.128
  • Synonym(s):
    • 2-hydroxybutane-1,2,4-tricarboxylate
    • homocitric acid
    • 3-hydroxy-3-carboxyadipic acid
    • (2R)-2-hydroxybutane-1,2,4-tricarboxylate
    • (R)-2-hydroxybutane-1,2,4-tricarboxylate
    • homocitrate
    • (R)-homocitrate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(C([O-])=O)CC(O)(C([O-])=O)CC([O-])=O" cannot be used as a page name in this wiki.



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