Difference between revisions of "CPD-7682"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9552 RXN-9552] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-petroslinoyl-[acyl-carr...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9552 RXN-9552] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxo-petroslinoyl-[acyl-carrier protein] reductase
+
** ORF
−
** 3-oxoacyl-(acyl-carrier-protein)
+
** phenylalanine_trna_synthtetase
 +
** alpha_subunit_of_phenylalanyl-trna_synthetase
 +
** ribosome_biogenesis_protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[3-oxo-petroselinoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxypetroselinoyl-ACPs]][c]
+
** 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 a 3-oxo-petroselinoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxypetroselinoyl-[acp][c]
+
** 1 L-phenylalanine[c] '''+''' 1 a tRNAphe[c] '''+''' 1 ATP[c] '''=>''' 1 an L-phenylalanyl-[tRNAphe][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9885]]
+
* [[Tiso_gene_16650]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4232]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_13083]]
+
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16467]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1625]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
Line 28: Line 42:
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5367]], petroselinate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5367 PWY-5367]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
Line 39: Line 53:
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P94283 P94283]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
 +
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
 +
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
 +
** [http://www.uniprot.org/uniprot/P56145 P56145]
 +
** [http://www.uniprot.org/uniprot/O67620 O67620]
 +
** [http://www.uniprot.org/uniprot/O73984 O73984]
 +
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
 +
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
 +
** [http://www.uniprot.org/uniprot/P56146 P56146]
 +
** [http://www.uniprot.org/uniprot/O27545 O27545]
 +
** [http://www.uniprot.org/uniprot/O26837 O26837]
 +
** [http://www.uniprot.org/uniprot/O58391 O58391]
 +
** [http://www.uniprot.org/uniprot/O83938 O83938]
 +
** [http://www.uniprot.org/uniprot/P47436 P47436]
 +
** [http://www.uniprot.org/uniprot/O67087 O67087]
 +
** [http://www.uniprot.org/uniprot/O83059 O83059]
 +
** [http://www.uniprot.org/uniprot/O84843 O84843]
 +
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 +
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 +
** [http://www.uniprot.org/uniprot/P47437 P47437]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 +
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 +
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 +
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 +
** [http://www.uniprot.org/uniprot/P43819 P43819]
 +
** [http://www.uniprot.org/uniprot/P94282 P94282]
 +
** [http://www.uniprot.org/uniprot/O84481 O84481]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 +
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 +
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 +
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 +
** [http://www.uniprot.org/uniprot/P43820 P43820]
 +
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 +
** [http://www.uniprot.org/uniprot/P15434 P15434]
 +
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 +
** [http://www.uniprot.org/uniprot/P37984 P37984]
 +
** [http://www.uniprot.org/uniprot/P51346 P51346]
 +
** [http://www.uniprot.org/uniprot/P75563 P75563]
 +
** [http://www.uniprot.org/uniprot/P75564 P75564]
 +
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 +
** [http://www.uniprot.org/uniprot/P95960 P95960]
 +
** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxo-petroslinoyl-[acyl-carrier protein] reductase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
+
{{#set: common name=phenylalanine_trna_synthtetase}}
−
{{#set: ec number=EC-1.1.1.100}}
+
{{#set: common name=alpha_subunit_of_phenylalanyl-trna_synthetase}}
−
{{#set: gene associated=Tiso_gene_9885|Tiso_gene_13083}}
+
{{#set: common name=ribosome_biogenesis_protein}}
−
{{#set: in pathway=PWY-5367}}
+
{{#set: ec number=EC-6.1.1.20}}
 +
{{#set: gene associated=Tiso_gene_16650|Tiso_gene_4232|Tiso_gene_16467|Tiso_gene_1625}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Revision as of 17:06, 10 January 2018

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • phenylalanine_trna_synthtetase
    • alpha_subunit_of_phenylalanyl-trna_synthetase
    • ribosome_biogenesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-phenylalanine[c] + 1 a tRNAphe[c] + 1 ATP[c] => 1 an L-phenylalanyl-[tRNAphe][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links








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