Difference between revisions of "Tiso gene 6458"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11486 RXN-11486] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15124 RXN-15124] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11486 RXN-11486] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15124 RXN-15124] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/2.5.1.85 EC-2.5.1.85]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 5 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''=>''' 5 [[PPI]][c] '''+''' 1 [[SOLANESYL-PYROPHOSPHATE]][c]
+
** 1 [[2-AMINOACRYLATE]][c] '''=>''' 1 [[CPD-16015]][c]
 
* With common name(s):
 
* With common name(s):
−
** 5 isopentenyl diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c] '''=>''' 5 diphosphate[c] '''+''' 1 all-trans-nonaprenyl diphosphate[c]
+
** 1 2-aminoprop-2-enoate[c] '''=>''' 1 2-iminopropanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_2848]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_18201]]
 
−
** [[pantograph]]-[[synechocystis]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6520]], nonaprenyl diphosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6520 PWY-6520]
+
* [[PWY0-1535]], D-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1535 PWY0-1535]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[TRYPDEG-PWY]], L-tryptophan degradation II (via pyruvate): [http://metacyc.org/META/NEW-IMAGE?object=TRYPDEG-PWY TRYPDEG-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[SERDEG-PWY]], L-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''7''' reactions found over '''24''' reactions in the full pathway
 +
* [[LCYSDEG-PWY]], L-cysteine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=LCYSDEG-PWY LCYSDEG-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* [[annotation]]:
−
** [[pantograph]]:
+
** [[pathwaytools]]:
−
*** [[synechocystis]]
+
*** [[experimental_annotation]]
−
*** [[esiliculosus]]
+
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27594 27594]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R09251 R09251]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.5.1.85}}
+
{{#set: in pathway=PWY0-1535|TRYPDEG-PWY|PWY-3661|SERDEG-PWY|PWY-5497|LCYSDEG-PWY}}
−
{{#set: gene associated=Tiso_gene_2848|Tiso_gene_18201}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: in pathway=PWY-6520}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus}}
+

Revision as of 18:07, 10 January 2018

Reaction RXN-15124

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-aminoprop-2-enoate[c] => 1 2-iminopropanoate[c]

Genes associated with this reaction

Pathways

  • PWY0-1535, D-serine degradation: PWY0-1535
    • 2 reactions found over 3 reactions in the full pathway
  • TRYPDEG-PWY, L-tryptophan degradation II (via pyruvate): TRYPDEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I: PWY-3661
    • 4 reactions found over 7 reactions in the full pathway
  • SERDEG-PWY, L-serine degradation: SERDEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 7 reactions found over 24 reactions in the full pathway
  • LCYSDEG-PWY, L-cysteine degradation II: LCYSDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6458&oldid=16280"