Difference between revisions of "RXN1F-163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETA-TOCOPHEROL BETA-TOCOPHEROL] == * smiles: ** CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=CC(=C...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BETA-TOCOPHEROL BETA-TOCOPHEROL] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=CC(=C(O1)2)C)C))
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* inchi key:
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** InChIKey=WGVKWNUPNGFDFJ-DQCZWYHMSA-N
 
* common name:
 
* common name:
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** threonine_alanine_trna_ligase_subfamily_protein
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** β-tocopherol
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** ORF
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* molecular weight:
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** alanyl-trna_synthetase
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** 416.686   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.7 EC-6.1.1.7]
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* Synonym(s):
 
* Synonym(s):
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** 5,8-dimethyltocol
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ALA-tRNAs]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c]
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* [[RXN-2562]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 a tRNAala[c] '''+''' 1 L-alanine[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-alanyl-[tRNAala][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2298]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3249]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18609]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19573]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18607]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12540 12540]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6857447 6857447]
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* LIGAND-RXN:
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* HMDB : HMDB06335
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** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C14152 C14152]
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** [http://www.uniprot.org/uniprot/P56452 P56452]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/O27718 O27718]
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** [http://www.chemspider.com/Chemical-Structure.5256784.html 5256784]
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** [http://www.uniprot.org/uniprot/O34526 O34526]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P47534 P47534]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=47771 47771]
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** [http://www.uniprot.org/uniprot/O58035 O58035]
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* METABOLIGHTS : MTBLC47771
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** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
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{{#set: smiles=CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=CC(=C(O1)2)C)C))}}
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** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
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{{#set: inchi key=InChIKey=WGVKWNUPNGFDFJ-DQCZWYHMSA-N}}
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** [http://www.uniprot.org/uniprot/Q57984 Q57984]
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{{#set: common name=β-tocopherol}}
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** [http://www.uniprot.org/uniprot/O51238 O51238]
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{{#set: molecular weight=416.686    }}
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** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
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{{#set: common name=5,8-dimethyltocol}}
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** [http://www.uniprot.org/uniprot/O83980 O83980]
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{{#set: produced by=RXN-2562}}
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** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
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** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
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** [http://www.uniprot.org/uniprot/O67323 O67323]
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** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
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** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
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** [http://www.uniprot.org/uniprot/P49588 P49588]
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** [http://www.uniprot.org/uniprot/P43815 P43815]
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** [http://www.uniprot.org/uniprot/P50475 P50475]
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** [http://www.uniprot.org/uniprot/P24075 P24075]
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** [http://www.uniprot.org/uniprot/P27866 P27866]
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** [http://www.uniprot.org/uniprot/P35029 P35029]
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** [http://www.uniprot.org/uniprot/P40825 P40825]
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** [http://www.uniprot.org/uniprot/P75368 P75368]
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** [http://www.uniprot.org/uniprot/Q48976 Q48976]
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** [http://www.uniprot.org/uniprot/P00957 P00957]
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** [http://www.uniprot.org/uniprot/P21894 P21894]
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** [http://www.uniprot.org/uniprot/O50189 O50189]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=threonine_alanine_trna_ligase_subfamily_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=alanyl-trna_synthetase}}
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{{#set: ec number=EC-6.1.1.7}}
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{{#set: gene associated=Tiso_gene_2298|Tiso_gene_3249|Tiso_gene_18609|Tiso_gene_19573|Tiso_gene_18607}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:08, 10 January 2018

Metabolite BETA-TOCOPHEROL

  • smiles:
    • CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=C(C(O)=CC(=C(O1)2)C)C))
  • inchi key:
    • InChIKey=WGVKWNUPNGFDFJ-DQCZWYHMSA-N
  • common name:
    • β-tocopherol
  • molecular weight:
    • 416.686
  • Synonym(s):
    • 5,8-dimethyltocol

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links




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