Difference between revisions of "RXN-8162"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/6....")
 
(Created page with "Category:Gene == Gene Tiso_gene_18824 == * left end position: ** 344 * transcription direction: ** POSITIVE * right end position: ** 2680 * centisome position: ** 12.40981...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1126 RXN-1126] ==
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== Gene Tiso_gene_18824 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 344
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
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** POSITIVE
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* right end position:
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** 2680
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* centisome position:
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** 12.409812   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[RXN-15556]]
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** 1 [[CPD-676]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CAFFEOYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 trans-caffeate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 trans-caffeoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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* [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_12275]]
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* [[PWY-7511]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14183]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6673]], caffeoylglucarate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6673 PWY-6673]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=344}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01943 R01943]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=2680}}
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{{#set: ec number=EC-6.2.1.12}}
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{{#set: centisome position=12.409812    }}
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{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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{{#set: in pathway=PWY-1121|PWY-7398|PWY-6673}}
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{{#set: pathway associated=PWY-7511}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Revision as of 18:11, 10 January 2018

Gene Tiso_gene_18824

  • left end position:
    • 344
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2680
  • centisome position:
    • 12.409812
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8162&oldid=16596"