Difference between revisions of "ARYLFORMAMIDASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protein-tyrosine_...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4975 == * left end position: ** 8336 * transcription direction: ** POSITIVE * right end position: ** 12260 * centisome position: ** 59.1835...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] ==
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== Gene Tiso_gene_4975 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 8336
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* common name:
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* transcription direction:
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** protein-tyrosine_phosphatase_mitochondrial_1
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.1.3.27 EC-3.1.3.27]
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** 12260
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* centisome position:
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** 59.183525   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[CARBPSYN-RXN]]
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** 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 an L-1-phosphatidyl-sn-glycerol[c]
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** experimental_annotation
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[GLUTAMIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_18092]]
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***ec-number
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** IN-SILICO_ANNOTATION
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** experimental_annotation
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***EC-NUMBER
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***automated-name-match
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-13202]]
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***EC-NUMBER
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** in-silico_annotation
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== Pathways  ==
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***ec-number
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* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
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** experimental_annotation
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** '''3''' reactions found over '''4''' reactions in the full pathway
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***ec-number
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* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
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* [[RXN-14196]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
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***ec-number
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** experimental_annotation
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* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
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***ec-number
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** '''7''' reactions found over '''16''' reactions in the full pathway
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* [[RXN-16909]]
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* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
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** in-silico_annotation
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** '''2''' reactions found over '''3''' reactions in the full pathway
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***ec-number
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* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
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** experimental_annotation
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** '''2''' reactions found over '''3''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-16910]]
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* [[annotation]]:
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** in-silico_annotation
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** [[pathwaytools]]:
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***ec-number
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*** [[experimental_annotation]]
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** experimental_annotation
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*** [[in-silico_annotation]]
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***ec-number
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== Pathways associated ==
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* [[PWY-4984]]
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* [[GLUTAMINDEG-PWY]]
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* [[ARGSYN-PWY]]
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* [[PWY-5154]]
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* [[PWY-7790]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7693]]
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* [[PWY-7400]]
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* [[PWY-7791]]
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* [[PWY-5686]]
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* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=8336}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16725 16725]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=12260}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02029 R02029]
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{{#set: centisome position=59.183525    }}
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* UNIPROT:
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{{#set: reaction associated=CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
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** [http://www.uniprot.org/uniprot/P18200 P18200]
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{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7693|PWY-7400|PWY-7791|PWY-5686|CITRULBIO-PWY}}
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** [http://www.uniprot.org/uniprot/Q9JRA8 Q9JRA8]
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** [http://www.uniprot.org/uniprot/Q9PM65 Q9PM65]
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** [http://www.uniprot.org/uniprot/P0A924 P0A924]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=protein-tyrosine_phosphatase_mitochondrial_1}}
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{{#set: ec number=EC-3.1.3.27}}
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{{#set: gene associated=Tiso_gene_18092}}
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{{#set: in pathway=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:13, 10 January 2018

Gene Tiso_gene_4975

  • left end position:
    • 8336
  • transcription direction:
    • POSITIVE
  • right end position:
    • 12260
  • centisome position:
    • 59.183525
  • Synonym(s):

Reactions associated

  • CARBPSYN-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • automated-name-match
  • GLUTAMIN-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • automated-name-match
  • RXN-13202
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-14196
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16909
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16910
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ARYLFORMAMIDASE-RXN&oldid=16723"