Difference between revisions of "2-KETO-3-METHYL-VALERATE"

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(Created page with "Category:Gene == Gene Tiso_gene_3233 == * left end position: ** 14957 * transcription direction: ** NEGATIVE * right end position: ** 17016 * centisome position: ** 87.141...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3233 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
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* left end position:
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* direction:
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** 14957
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** 1-deoxy-d-xylulose_5-phosphate_chloroplast
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* right end position:
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* ec number:
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** 17016
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** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
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* centisome position:
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** 87.14170   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[GSHTRAN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[GAP]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 H+[c] '''+''' 1 pyruvate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
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***ec-number
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* [[GST-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* [[Tiso_gene_17311]]
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** experimental_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-13673]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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** [[pantograph]]-[[athaliana]]
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** experimental_annotation
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** [[pantograph]]-[[synechocystis]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-15680]]
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** [[pantograph]]-[[creinhardtii]]
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** in-silico_annotation
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== Pathways  ==
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***ec-number
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** experimental_annotation
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** '''9''' reactions found over '''9''' reactions in the full pathway
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***ec-number
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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== Pathways associated ==
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7112]]
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* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
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* [[PWY-6842]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-4061]]
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* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
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* [[PWY-7533]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=14957}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
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{{#set: right end position=17016}}
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* LIGAND-RXN:
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{{#set: centisome position=87.14170    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
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{{#set: ec number=EC-2.2.1.7}}
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{{#set: gene associated=Tiso_gene_17311}}
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{{#set: in pathway=NONMEVIPP-PWY|PYRIDOXSYN-PWY|PWY-6891|PWY-6892|PWY-7560}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:14, 10 January 2018

Reaction DXS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-d-xylulose_5-phosphate_chloroplast
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 pyruvate[c] + 1 D-glyceraldehyde 3-phosphate[c] => 1 1-deoxy-D-xylulose 5-phosphate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6891, thiazole biosynthesis II (aerobic bacteria): PWY-6891
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria): PWY-6892
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links







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