Difference between revisions of "KDOTRANS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6550 RXN-6550] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
(Created page with "Category:Gene == Gene Tiso_gene_8720 == * left end position: ** 62 * transcription direction: ** POSITIVE * right end position: ** 2159 * centisome position: ** 0.6227401...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6550 RXN-6550] ==
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== Gene Tiso_gene_8720 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 62
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
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** POSITIVE
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* right end position:
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** 2159
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* centisome position:
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** 0.6227401   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[2PGADEHYDRAT-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-137]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6224]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 gibberellin A4[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 gibberellin A34[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_3330]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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== Pathways associated ==
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* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
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* [[GLYCOLYSIS]]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6901]]
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== Reconstruction information  ==
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* [[P124-PWY]]
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* [[orthology]]:
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* [[PWY-6142]]
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** [[pantograph]]:
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* [[P341-PWY]]
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*** [[esiliculosus]]
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* [[PWY-1622]]
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*** [[athaliana]]
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* [[GLUCONEO-PWY]]
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* [[PWY-6886]]
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* [[PWY66-399]]
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* [[PWY-1042]]
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* [[NPGLUCAT-PWY]]
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* [[PWY-5723]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5484]]
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* [[PWY-7124]]
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* [[PWY-7003]]
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* [[PWY-2221]]
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* [[PWY-6416]]
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* [[PWY-6163]]
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* [[PWY-7218]]
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* [[QUINATEDEG-PWY]]
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* [[P122-PWY]]
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* [[PWY-6707]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=62}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06338 R06338]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=2159}}
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{{#set: ec number=EC-1.14.11}}
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{{#set: centisome position=0.6227401    }}
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{{#set: gene associated=Tiso_gene_3330}}
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{{#set: reaction associated=2PGADEHYDRAT-RXN|3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
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{{#set: in pathway=PWY-102}}
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{{#set: pathway associated=GLYCOLYSIS|PWY-6901|P124-PWY|PWY-6142|P341-PWY|PWY-1622|GLUCONEO-PWY|PWY-6886|PWY66-399|PWY-1042|NPGLUCAT-PWY|PWY-5723|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-7124|PWY-7003|PWY-2221|PWY-6416|PWY-6163|PWY-7218|QUINATEDEG-PWY|P122-PWY|PWY-6707}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 18:15, 10 January 2018

Gene Tiso_gene_8720

  • left end position:
    • 62
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2159
  • centisome position:
    • 0.6227401
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=KDOTRANS-RXN&oldid=16883"