Difference between revisions of "CPD0-2123"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HDS HDS] == * direction: ** REVERSIBLE * common name: ** 4-hydroxy-3-methylbut-2-en-1-yl diphosphat...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** orotate_phosphor...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HDS HDS] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
+
** orotate_phosphoribosyltransferase
 +
** trna_(cytosine_-c_)-methyltransferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.4.2.10 EC-2.4.2.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[Protein-Dithiols]][h] '''+''' 1.0 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][h] '''<=>''' 1.0 [[Protein-Disulfides]][h] '''+''' 1.0 [[HYDROXY-METHYL-BUTENYL-DIP]][h] '''+''' 1.0 [[WATER]][h] '''+''' 1.0 [[PROTON]][h]
+
** 1 [[PPI]][c] '''+''' 1 [[OROTIDINE-5-PHOSPHATE]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 a protein dithiol[h] '''+''' 1.0 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[h] '''<=>''' 1.0 a protein disulfide[h] '''+''' 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[h] '''+''' 1.0 H2O[h] '''+''' 1.0 H+[h]
+
** 1 diphosphate[c] '''+''' 1 orotidine 5'-phosphate[c] '''<=>''' 1 orotate[c] '''+''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15758]]
+
* [[Tiso_gene_11164]]
−
** [[pantograph]]-[[creinhardtii]]
+
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11163]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18647]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[creinhardtii]]
+
*** [[synechocystis]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10380 10380]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P08309 P08309]
 +
** [http://www.uniprot.org/uniprot/P11172 P11172]
 +
** [http://www.uniprot.org/uniprot/P18132 P18132]
 +
** [http://www.uniprot.org/uniprot/P77889 P77889]
 +
** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
 +
** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
 +
** [http://www.uniprot.org/uniprot/O67742 O67742]
 +
** [http://www.uniprot.org/uniprot/O58855 O58855]
 +
** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
 +
** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
 +
** [http://www.uniprot.org/uniprot/P56814 P56814]
 +
** [http://www.uniprot.org/uniprot/Q58509 Q58509]
 +
** [http://www.uniprot.org/uniprot/O28533 O28533]
 +
** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
 +
** [http://www.uniprot.org/uniprot/P25972 P25972]
 +
** [http://www.uniprot.org/uniprot/O27888 O27888]
 +
** [http://www.uniprot.org/uniprot/P65915 P65915]
 +
** [http://www.uniprot.org/uniprot/P46534 P46534]
 +
** [http://www.uniprot.org/uniprot/P43855 P43855]
 +
** [http://www.uniprot.org/uniprot/P31754 P31754]
 +
** [http://www.uniprot.org/uniprot/P18904 P18904]
 +
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 +
** [http://www.uniprot.org/uniprot/P09556 P09556]
 +
** [http://www.uniprot.org/uniprot/P21846 P21846]
 +
** [http://www.uniprot.org/uniprot/P35788 P35788]
 +
** [http://www.uniprot.org/uniprot/P08870 P08870]
 +
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 +
** [http://www.uniprot.org/uniprot/Q45918 Q45918]
 +
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 +
** [http://www.uniprot.org/uniprot/P41923 P41923]
 +
** [http://www.uniprot.org/uniprot/Q55574 Q55574]
 +
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 +
** [http://www.uniprot.org/uniprot/O76139 O76139]
 +
** [http://www.uniprot.org/uniprot/O61790 O61790]
 +
** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
 +
** [http://www.uniprot.org/uniprot/O94331 O94331]
 +
** [http://www.uniprot.org/uniprot/P30402 P30402]
 +
** [http://www.uniprot.org/uniprot/P13298 P13298]
 +
** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase}}
+
{{#set: common name=orotate_phosphoribosyltransferase}}
−
{{#set: gene associated=Tiso_gene_15758}}
+
{{#set: common name=trna_(cytosine_-c_)-methyltransferase}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-2.4.2.10}}
 +
{{#set: gene associated=Tiso_gene_11164|Tiso_gene_11163|Tiso_gene_18647}}
 +
{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii}}
+
{{#set: reconstruction source=synechocystis|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:17, 10 January 2018

Reaction OROPRIBTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • orotate_phosphoribosyltransferase
    • trna_(cytosine_-c_)-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 diphosphate[c] + 1 orotidine 5'-phosphate[c] <=> 1 orotate[c] + 1 5-phospho-α-D-ribose 1-diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links








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