Difference between revisions of "RXN-12861"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosphoseri...")
 
(Created page with "Category:Gene == Gene Tiso_gene_3581 == * left end position: ** 3134 * transcription direction: ** NEGATIVE * right end position: ** 13315 * centisome position: ** 16.5601...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] ==
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== Gene Tiso_gene_3581 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 3134
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** phosphoserine_aminotransferase
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* right end position:
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* ec number:
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** 13315
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** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
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* centisome position:
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** 16.560106   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ADENOSINETRIPHOSPHATASE-RXN]]
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** 1 [[3-P-SERINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
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* With common name(s):
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** 1 3-phospho-L-serine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17123]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15686]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[ATPASE-RXN]]
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** in-silico_annotation
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** '''3''' reactions found over '''3''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[TCX8]]
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* [[orthology]]:
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]:
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== Pathways associated ==
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3134}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14329 14329]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=13315}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04173 R04173]
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{{#set: centisome position=16.560106    }}
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* UNIPROT:
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{{#set: reaction associated=ADENOSINETRIPHOSPHATASE-RXN|ATPASE-RXN|TCX8}}
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** [http://www.uniprot.org/uniprot/P10658 P10658]
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** [http://www.uniprot.org/uniprot/P23721 P23721]
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** [http://www.uniprot.org/uniprot/Q9PIH3 Q9PIH3]
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** [http://www.uniprot.org/uniprot/Q9CHW5 Q9CHW5]
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** [http://www.uniprot.org/uniprot/P44336 P44336]
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** [http://www.uniprot.org/uniprot/O34370 O34370]
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** [http://www.uniprot.org/uniprot/P62676 P62676]
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** [http://www.uniprot.org/uniprot/P33330 P33330]
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** [http://www.uniprot.org/uniprot/P19689 P19689]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=phosphoserine_aminotransferase}}
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{{#set: ec number=EC-2.6.1.52}}
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{{#set: gene associated=Tiso_gene_17123|Tiso_gene_15686}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:18, 10 January 2018

Gene Tiso_gene_3581

  • left end position:
    • 3134
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 13315
  • centisome position:
    • 16.560106
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12861&oldid=17184"