Difference between revisions of "Tiso gene 5254"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NICONUCADENYLYLTRAN-RXN NICONUCADENYLYLTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(Created page with "Category:Gene == Gene Tiso_gene_1537 == * left end position: ** 149 * transcription direction: ** POSITIVE * right end position: ** 1729 * centisome position: ** 0.6363442...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NICONUCADENYLYLTRAN-RXN NICONUCADENYLYLTRAN-RXN] ==
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== Gene Tiso_gene_1537 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 149
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* common name:
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* transcription direction:
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** Probable nicotinate-nucleotide adenylyltransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.7.7.18 EC-2.7.7.18]
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** 1729
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* centisome position:
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** 0.6363442   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3.1.1.64-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[DEAMIDO-NAD]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 ATP[c] '''+''' 1 β-nicotinate D-ribonucleotide[c] '''+''' 1 H+[c] '''=>''' 1 diphosphate[c] '''+''' 1 nicotinate adenine dinucleotide[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[CARBOXYLESTERASE-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***automated-name-match
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* [[Tiso_gene_6231]]
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** [[pantograph]]-[[esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[RETINYL-PALMITATE-ESTERASE-RXN]]
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***AUTOMATED-NAME-MATCH
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** in-silico_annotation
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== Pathways  ==
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***automated-name-match
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* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
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** [[pantograph]]-[[esiliculosus]]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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* [[RXN-10711]]
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* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5653 PWY-5653]
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** in-silico_annotation
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** '''3''' reactions found over '''4''' reactions in the full pathway
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***automated-name-match
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* [[PYRIDNUCSYN-PWY]], NAD biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
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** [[pantograph]]-[[esiliculosus]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-10767]]
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* [[PWY-7761]], NAD salvage pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7761 PWY-7761]
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** in-silico_annotation
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** '''1''' reactions found over '''4''' reactions in the full pathway
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***automated-name-match
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* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSAL-PWY PYRIDNUCSAL-PWY]
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** [[pantograph]]-[[esiliculosus]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-12252]]
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== Reconstruction information  ==
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** in-silico_annotation
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* [[annotation]]:
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***automated-name-match
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** [[pathwaytools]]:
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** [[pantograph]]-[[esiliculosus]]
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*** [[experimental_annotation]]
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* [[RXN-12575]]
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** in-silico_annotation
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***automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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* [[RXNQT-4366]]
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** in-silico_annotation
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***automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[PWY-6857]]
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* [[PWY-6303]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=149}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22860 22860]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=1729}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03005 R03005]
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{{#set: centisome position=0.6363442    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3.1.1.64-RXN|CARBOXYLESTERASE-RXN|RETINYL-PALMITATE-ESTERASE-RXN|RXN-10711|RXN-10767|RXN-12252|RXN-12575|RXNQT-4366}}
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{{#set: common name=Probable nicotinate-nucleotide adenylyltransferase}}
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{{#set: pathway associated=PWY-6857|PWY-6303}}
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{{#set: ec number=EC-2.7.7.18}}
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{{#set: gene associated=Tiso_gene_6231}}
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{{#set: in pathway=PWY-5381|PWY-5653|PYRIDNUCSYN-PWY|PWY-7761|PYRIDNUCSAL-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation}}
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Revision as of 18:19, 10 January 2018

Gene Tiso_gene_1537

  • left end position:
    • 149
  • transcription direction:
    • POSITIVE
  • right end position:
    • 1729
  • centisome position:
    • 0.6363442
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5254&oldid=17254"