Difference between revisions of "Tiso gene 15060"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
 +
** isocitrate dehydrogenase (NADP+)
 
** ORF
 
** ORF
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42]
 
 
* Synonym(s):
 
* Synonym(s):
 +
** oxalosuccinate decarboxylase
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (NADP) dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** NADP-specific isocitrate dehydrogenase
 +
** NADP-linked isocitrate dehydrogenase
 +
** NADP isocitric dehydrogenase
 +
** isocitrate dehydrogenase (NADP-dependent)
 +
** NADP-dependent isocitric dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** NADP+-linked isocitrate dehydrogenase
 +
** IDH (ambiguous)
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** NADP+-ICDH
 +
** NADP+-IDH
 +
** IDP
 +
** IDP1
 +
** IDP2
 +
** IDP3
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
+
** 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c] '''+''' 1 NADPH[c]
+
** 1 NADP+[c] '''+''' 1 D-threo-isocitrate[c] '''<=>''' 1 oxalosuccinate[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18262]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
* [[Tiso_gene_10809]]
 
* [[Tiso_gene_10809]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
Line 26: Line 40:
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
* [[Tiso_gene_18262]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''9''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''7''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
−
* [[manual]]:
 
−
** [[primary_network]]
 
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
Line 62: Line 54:
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25588 25588]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
−
* PIR:
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P16100 P16100]
+
−
** [http://www.uniprot.org/uniprot/P33198 P33198]
+
−
** [http://www.uniprot.org/uniprot/P41561 P41561]
+
−
** [http://www.uniprot.org/uniprot/P41562 P41562]
+
−
** [http://www.uniprot.org/uniprot/P50214 P50214]
+
−
** [http://www.uniprot.org/uniprot/P41560 P41560]
+
−
** [http://www.uniprot.org/uniprot/P56063 P56063]
+
−
** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
+
−
** [http://www.uniprot.org/uniprot/P21954 P21954]
+
−
** [http://www.uniprot.org/uniprot/P08200 P08200]
+
−
** [http://www.uniprot.org/uniprot/O29610 O29610]
+
−
** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
+
−
** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
+
−
** [http://www.uniprot.org/uniprot/P39126 P39126]
+
−
** [http://www.uniprot.org/uniprot/P50216 P50216]
+
−
** [http://www.uniprot.org/uniprot/P50215 P50215]
+
−
** [http://www.uniprot.org/uniprot/Q04467 Q04467]
+
−
** [http://www.uniprot.org/uniprot/P50217 P50217]
+
−
** [http://www.uniprot.org/uniprot/P41939 P41939]
+
−
** [http://www.uniprot.org/uniprot/P48735 P48735]
+
−
** [http://www.uniprot.org/uniprot/P53982 P53982]
+
−
** [http://www.uniprot.org/uniprot/P50218 P50218]
+
−
** [http://www.uniprot.org/uniprot/O65853 O65853]
+
−
** [http://www.uniprot.org/uniprot/Q40345 Q40345]
+
−
** [http://www.uniprot.org/uniprot/O14254 O14254]
+
−
** [http://www.uniprot.org/uniprot/O75874 O75874]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=isocitrate dehydrogenase (NADP+)}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.1.1.42}}
+
{{#set: common name=oxalosuccinate decarboxylase|oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
−
{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
+
{{#set: gene associated=Tiso_gene_10809|Tiso_gene_18262}}
−
{{#set: in pathway=FERMENTATION-PWY|PWY-5913|PWY-6549|PWY-7268|P23-PWY|P105-PWY|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|TCA}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction source=esiliculosus}}
 
{{#set: reconstruction source=esiliculosus}}
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:20, 10 January 2018

Reaction RXN-9951

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate dehydrogenase (NADP+)
    • ORF
  • Synonym(s):
    • oxalosuccinate decarboxylase
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15060&oldid=17298"