Difference between revisions of "RNA-Holder"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARYLDIALKYLPHOSPHATASE-RXN ARYLDIALKYLPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyrophosphate-d...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARYLDIALKYLPHOSPHATASE-RXN ARYLDIALKYLPHOSPHATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** pyrophosphate-dependent_phosphofructose_kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.8.1 EC-3.1.8.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.11 EC-2.7.1.11]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Aryl-Dialkyl-Phosphate]][c] '''=>''' 1 [[Dialkyl-phosphates]][c] '''+''' 1 [[Aryl-Alcohol]][c]
+
** 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 an aryl dialkyl phosphate[c] '''=>''' 1 a dialkyl phosphate[c] '''+''' 1 a phenol[c]
+
** 1 β-D-fructofuranose 6-phosphate[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 fructose 1,6-bisphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9894]]
+
* [[Tiso_gene_5733]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_596]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[creinhardtii]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16109 16109]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03979 R03979]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27169 P27169]
+
** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
−
** [http://www.uniprot.org/uniprot/P27170 P27170]
+
** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
−
** [http://www.uniprot.org/uniprot/P52430 P52430]
+
** [http://www.uniprot.org/uniprot/P12382 P12382]
 +
** [http://www.uniprot.org/uniprot/Q27665 Q27665]
 +
** [http://www.uniprot.org/uniprot/P52034 P52034]
 +
** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
 +
** [http://www.uniprot.org/uniprot/P43863 P43863]
 +
** [http://www.uniprot.org/uniprot/P20275 P20275]
 +
** [http://www.uniprot.org/uniprot/P47457 P47457]
 +
** [http://www.uniprot.org/uniprot/Q01813 Q01813]
 +
** [http://www.uniprot.org/uniprot/Q07636 Q07636]
 +
** [http://www.uniprot.org/uniprot/P16861 P16861]
 +
** [http://www.uniprot.org/uniprot/P16862 P16862]
 +
** [http://www.uniprot.org/uniprot/P00512 P00512]
 +
** [http://www.uniprot.org/uniprot/P0A796 P0A796]
 +
** [http://www.uniprot.org/uniprot/P06999 P06999]
 +
** [http://www.uniprot.org/uniprot/P08237 P08237]
 +
** [http://www.uniprot.org/uniprot/P00511 P00511]
 +
** [http://www.uniprot.org/uniprot/P70927 P70927]
 +
** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
 +
** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
 +
** [http://www.uniprot.org/uniprot/P30835 P30835]
 +
** [http://www.uniprot.org/uniprot/Q03215 Q03215]
 +
** [http://www.uniprot.org/uniprot/Q03216 Q03216]
 +
** [http://www.uniprot.org/uniprot/P80019 P80019]
 +
** [http://www.uniprot.org/uniprot/Q59214 Q59214]
 +
** [http://www.uniprot.org/uniprot/Q27705 Q27705]
 +
** [http://www.uniprot.org/uniprot/P75476 P75476]
 +
** [http://www.uniprot.org/uniprot/P72830 P72830]
 +
** [http://www.uniprot.org/uniprot/Q55988 Q55988]
 +
** [http://www.uniprot.org/uniprot/Q49084 Q49084]
 +
** [http://www.uniprot.org/uniprot/O08333 O08333]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.1.8.1}}
+
{{#set: common name=pyrophosphate-dependent_phosphofructose_kinase}}
−
{{#set: gene associated=Tiso_gene_9894}}
+
{{#set: ec number=EC-2.7.1.11}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_5733|Tiso_gene_596}}
 +
{{#set: in pathway=PWY-1042|GLYCOLYSIS|PWY-7385|PWY-1861|ANAGLYCOLYSIS-PWY|PWY-5484}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 18:22, 10 January 2018

Reaction 6PFRUCTPHOS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyrophosphate-dependent_phosphofructose_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway

Reconstruction information

External links







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