Difference between revisions of "QUINOPRIBOTRANS-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=4-CYTIDINE-5-DIPHOSPHO-2-C 4-CYTIDINE-5-DIPHOSPHO-2-C] == * smiles: ** CC(O)(CO)C(O)COP(OP([O-]...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=4-CYTIDINE-5-DIPHOSPHO-2-C 4-CYTIDINE-5-DIPHOSPHO-2-C] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
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* smiles:
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* direction:
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** CC(O)(CO)C(O)COP(OP([O-])(=O)OCC2(C(C(O)C(N1(C(N=C(C=C1)N)=O))O2)O))([O-])=O
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** REVERSIBLE
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* inchi key:
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** InChIKey=YFAUKWZNPVBCFF-XHIBXCGHSA-L
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* common name:
 
* common name:
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** 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
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** spermidine_synthase
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* molecular weight:
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* ec number:
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** 519.295   
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** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
 
* Synonym(s):
 
* Synonym(s):
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** CDP-ME
 
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** CDP-methyl-D-erythritol
 
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** 4-diphosphocytidyl-2C-methyl-D-erythritol
 
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** 4-diphosphocytidyl-2-C-methylerythritol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[2.7.1.148-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[SPERMIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
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* [[2.7.7.60-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 putrescine[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''<=>''' 1 spermidine[c] '''+''' 1 H+[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_16718]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17081]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17803]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_16717]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=24970669 24970669]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57823 57823]
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** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
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* BIGG : 4c2me
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P19623 P19623]
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** [http://www.genome.jp/dbget-bin/www_bget?C11435 C11435]
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** [http://www.uniprot.org/uniprot/Q57761 Q57761]
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{{#set: smiles=CC(O)(CO)C(O)COP(OP([O-])(=O)OCC2(C(C(O)C(N1(C(N=C(C=C1)N)=O))O2)O))([O-])=O}}
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** [http://www.uniprot.org/uniprot/Q12074 Q12074]
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{{#set: inchi key=InChIKey=YFAUKWZNPVBCFF-XHIBXCGHSA-L}}
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** [http://www.uniprot.org/uniprot/Q12455 Q12455]
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{{#set: common name=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol}}
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** [http://www.uniprot.org/uniprot/P09158 P09158]
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{{#set: molecular weight=519.295    }}
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** [http://www.uniprot.org/uniprot/O48660 O48660]
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{{#set: common name=CDP-ME|CDP-methyl-D-erythritol|4-diphosphocytidyl-2C-methyl-D-erythritol|4-diphosphocytidyl-2-C-methylerythritol}}
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{{#set: direction=REVERSIBLE}}
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{{#set: consumed by=2.7.1.148-RXN}}
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{{#set: common name=spermidine_synthase}}
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{{#set: produced by=2.7.7.60-RXN}}
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{{#set: ec number=EC-2.5.1.16}}
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{{#set: gene associated=Tiso_gene_16718|Tiso_gene_17081|Tiso_gene_17803|Tiso_gene_16717}}
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{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}

Revision as of 18:23, 10 January 2018

Reaction SPERMIDINESYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • spermidine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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