Difference between revisions of "3.1.13.4-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** saccharopine_dehydrogen...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=KDO2-LIPID-A KDO2-LIPID-A] == * smiles: ** CCCCCCCCCCCCCC(=O)OC(CCCCCCCCCCC)CC(=O)OC4(C(C(OCC1(...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=KDO2-LIPID-A KDO2-LIPID-A] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CCCCCCCCCCCCCC(=O)OC(CCCCCCCCCCC)CC(=O)OC4(C(C(OCC1(OC(OP([O-])([O-])=O)C(NC(CC(O)CCCCCCCCCCC)=O)C(OC(CC(O)CCCCCCCCCCC)=O)C(O)1))OC(COC3(C([O-])=O)(O[CH](C(CO)O)C(O)C(OC2(C([O-])=O)(O[CH](C(CO)O)C(O)C(O)C2))C3))C4OP([O-])([O-])=O)NC(CC(OC(CCCCCCCCCCC)=O)CCCCCCCCCCC)=O)
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* inchi key:
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** InChIKey=DIXUKJUHGLIZGU-PPLOIMQXSA-H
 
* common name:
 
* common name:
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** saccharopine_dehydrogenase
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** α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/1.5.1.9 EC-1.5.1.9]
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** 2232.696   
 
* Synonym(s):
 
* Synonym(s):
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** Re endotoxin
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** (Kdo)2-lipid A
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** Kdo2-lipid A
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[SACCHAROPINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[ALLYSINE]][c]
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* [[MYRISTOYLACYLTRAN-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 L-saccharopine[c] '''=>''' 1 H+[c] '''+''' 1 L-glutamate[c] '''+''' 1 NADH[c] '''+''' 1 (S)-2-amino-6-oxohexanoate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_9366]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_7038]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_7039]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_4160]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10095]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_1156]]
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24520 24520]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=91820278 91820278]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R02313 R02313]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58540 58540]
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{{#set: direction=LEFT-TO-RIGHT}}
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* BIGG : lipa
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{{#set: common name=saccharopine_dehydrogenase}}
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* LIGAND-CPD:
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{{#set: ec number=EC-1.5.1.9}}
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** [http://www.genome.jp/dbget-bin/www_bget?C06026 C06026]
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{{#set: gene associated=Tiso_gene_9366|Tiso_gene_7038|Tiso_gene_7039|Tiso_gene_4160|Tiso_gene_10095|Tiso_gene_1156}}
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{{#set: smiles=CCCCCCCCCCCCCC(=O)OC(CCCCCCCCCCC)CC(=O)OC4(C(C(OCC1(OC(OP([O-])([O-])=O)C(NC(CC(O)CCCCCCCCCCC)=O)C(OC(CC(O)CCCCCCCCCCC)=O)C(O)1))OC(COC3(C([O-])=O)(O[CH](C(CO)O)C(O)C(OC2(C([O-])=O)(O[CH](C(CO)O)C(O)C(O)C2))C3))C4OP([O-])([O-])=O)NC(CC(OC(CCCCCCCCCCC)=O)CCCCCCCCCCC)=O)}}
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{{#set: in pathway=LYSINE-DEG1-PWY}}
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{{#set: inchi key=InChIKey=DIXUKJUHGLIZGU-PPLOIMQXSA-H}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: molecular weight=2232.696    }}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: common name=Re endotoxin|(Kdo)2-lipid A|Kdo2-lipid A}}
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{{#set: reconstruction category=annotation}}
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{{#set: produced by=MYRISTOYLACYLTRAN-RXN}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 17:27, 10 January 2018

Metabolite KDO2-LIPID-A

  • smiles:
    • CCCCCCCCCCCCCC(=O)OC(CCCCCCCCCCC)CC(=O)OC4(C(C(OCC1(OC(OP([O-])([O-])=O)C(NC(CC(O)CCCCCCCCCCC)=O)C(OC(CC(O)CCCCCCCCCCC)=O)C(O)1))OC(COC3(C([O-])=O)(O[CH](C(CO)O)C(O)C(OC2(C([O-])=O)(O[CH](C(CO)O)C(O)C(O)C2))C3))C4OP([O-])([O-])=O)NC(CC(OC(CCCCCCCCCCC)=O)CCCCCCCCCCC)=O)
  • inchi key:
    • InChIKey=DIXUKJUHGLIZGU-PPLOIMQXSA-H
  • common name:
    • α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
  • molecular weight:
    • 2232.696
  • Synonym(s):
    • Re endotoxin
    • (Kdo)2-lipid A
    • Kdo2-lipid A

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCCCCCCCCCCCCC(=O)OC(CCCCCCCCCCC)CC(=O)OC4(C(C(OCC1(OC(OP([O-])([O-])=O)C(NC(CC(O)CCCCCCCCCCC)=O)C(OC(CC(O)CCCCCCCCCCC)=O)C(O)1))OC(COC3(C([O-])=O)(O[CH](C(CO)O)C(O)C(OC2(C([O-])=O)(O[CH](C(CO)O)C(O)C(O)C2))C3))C4OP([O-])([O-])=O)NC(CC(OC(CCCCCCCCCCC)=O)CCCCCCCCCCC)=O)" cannot be used as a page name in this wiki.



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