Difference between revisions of "RXN-8028"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_7948 == * left end position: ** 7283 * transcription direction: ** POSITIVE * right end position: ** 8322 * centisome position: ** 68.23122...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec nu...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_7948 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] ==
−
* left end position:
+
* direction:
−
** 7283
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** ORF
−
* right end position:
+
* ec number:
−
** 8322
+
** [http://enzyme.expasy.org/EC/2.1.1.13 EC-2.1.1.13]
−
* centisome position:
+
−
** 68.23122   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[CYTOCHROME-C-OXIDASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[HOMO-CYS]][c] '''+''' 1 [[5-METHYL-THF-GLU-N]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 L-homocysteine[c] '''+''' 1 an N5-methyl-tetrahydrofolate[c] '''=>''' 1 L-methionine[c] '''+''' 1 a tetrahydrofolate[c]
−
***ec-number
+
 
−
* [[RXN-15830]]
+
== Genes associated with this reaction  ==
−
** in-silico_annotation
+
Genes have been associated with this reaction based on different elements listed below.
−
***ec-number
+
* [[Tiso_gene_1602]]
−
** experimental_annotation
+
** IN-SILICO_ANNOTATION
−
***ec-number
+
***EC-NUMBER
−
== Pathways associated ==
+
** EXPERIMENTAL_ANNOTATION
−
* [[PWY-6692]]
+
***EC-NUMBER
−
* [[PWY-3781]]
+
** [[pantograph]]-[[esiliculosus]]
−
* [[PWY-7279]]
+
== Pathways  ==
−
* [[PWY-4521]]
+
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=7283}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
−
{{#set: right end position=8322}}
+
* LIGAND-RXN:
−
{{#set: centisome position=68.23122    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
−
{{#set: reaction associated=CYTOCHROME-C-OXIDASE-RXN|RXN-15830}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-6692|PWY-3781|PWY-7279|PWY-4521}}
+
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
 +
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
 +
** [http://www.uniprot.org/uniprot/O33259 O33259]
 +
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
 +
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
 +
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
 +
** [http://www.uniprot.org/uniprot/P13009 P13009]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-2.1.1.13}}
 +
{{#set: gene associated=Tiso_gene_1602}}
 +
{{#set: in pathway=PWY-3841|ADENOSYLHOMOCYSCAT-PWY|1CMET2-PWY|HOMOSER-METSYN-PWY|HSERMETANA-PWY|PWY-2201}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 18:36, 10 January 2018

Reaction HOMOCYSMETB12-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-homocysteine[c] + 1 an N5-methyl-tetrahydrofolate[c] => 1 L-methionine[c] + 1 a tetrahydrofolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8028&oldid=18593"