Difference between revisions of "RXN-14140"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.31-RXN 2.4.2.31-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** vacuolar_protein_...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-_dehydrogenas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.31-RXN 2.4.2.31-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** 3-hydroxyacyl-_dehydrogenase
−
** vacuolar_protein_8
+
** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
−
** ankyrin_repeat_domain_protein
+
** hydroxyacyl-coenzyme_a_mitochondrial
−
** sir2-family_protein_hdac1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.2.31 EC-2.4.2.31]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Protein-L-Arginines]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NIACINAMIDE]][c] '''+''' 1 [[CPD-557]][c]
+
** 1 [[K-HEXANOYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[OH-HEXANOYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [protein]-L-arginine[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 nicotinamide[c] '''+''' 1 a protein-N&omega;-(ADP-D-ribosyl)-L-arginine[c]
+
** 1 3-oxohexanoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 (S)-3-hydroxyhexanoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1416]]
+
* [[Tiso_gene_14027]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18838]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_16539]]
+
* [[Tiso_gene_14262]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_17880]]
+
** EXPERIMENTAL_ANNOTATION
−
** IN-SILICO_ANNOTATION
+
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_18844]]
+
* [[Tiso_gene_5857]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_19256]]
+
** EXPERIMENTAL_ANNOTATION
−
** IN-SILICO_ANNOTATION
+
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_16775]]
+
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_18839]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_17938]]
+
* [[Tiso_gene_14026]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_14179]]
+
** EXPERIMENTAL_ANNOTATION
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16690]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8768]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19047]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16538]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13548]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18843]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5361]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1521]]
+
−
** IN-SILICO_ANNOTATION
+
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 +
** '''5''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31144 31144]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00555 R00555]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04748 R04748]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q03515 Q03515]
+
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P55806 P55806]
+
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
−
** [http://www.uniprot.org/uniprot/P52961 P52961]
+
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
−
** [http://www.uniprot.org/uniprot/P55807 P55807]
+
{{#set: ec number=EC-1.1.1.35}}
−
** [http://www.uniprot.org/uniprot/Q92080 Q92080]
+
{{#set: gene associated=Tiso_gene_14027|Tiso_gene_18838|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_18839|Tiso_gene_14026}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=PWY-6863}}
−
{{#set: common name=ORF}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: common name=vacuolar_protein_8}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: common name=ankyrin_repeat_domain_protein}}
+
{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
−
{{#set: common name=sir2-family_protein_hdac1}}
+
−
{{#set: ec number=EC-2.4.2.31}}
+
−
{{#set: gene associated=Tiso_gene_1416|Tiso_gene_16539|Tiso_gene_17880|Tiso_gene_18844|Tiso_gene_19256|Tiso_gene_16775|Tiso_gene_17938|Tiso_gene_14179|Tiso_gene_16690|Tiso_gene_8768|Tiso_gene_19047|Tiso_gene_16538|Tiso_gene_13548|Tiso_gene_18843|Tiso_gene_5361|Tiso_gene_1521}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:40, 10 January 2018

Reaction RXN-12570

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
    • hydroxyacyl-coenzyme_a_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-oxohexanoyl-CoA[c] + 1 H+[c] + 1 NADH[c] => 1 NAD+[c] + 1 (S)-3-hydroxyhexanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 5 reactions found over 11 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14140&oldid=18925"