Difference between revisions of "2.4.1.232-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1435 RXN1G-1435] == * direction: ** LEFT-TO-RIGHT * common name: ** trehalose-phosphatase * e...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** tryptophan_synthase_(al...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1435 RXN1G-1435] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trehalose-phosphatase
+
** tryptophan_synthase_(alpha_beta_chains)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.12 EC-3.1.3.12]
+
** [http://enzyme.expasy.org/EC/4.2.1.20 EC-4.2.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD1G-768]][c] '''=>''' 1 [[CPD1G-1344]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[SER]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[GAP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 6-O-α-mycolyl-trehalose 6-phosphate[c] '''=>''' 1 α, α'-trehalose 6-α-mycolate[c] '''+''' 1 phosphate[c]
+
** 1 L-serine[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''=>''' 1 H2O[c] '''+''' 1 L-tryptophan[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10840]]
+
* [[Tiso_gene_4604]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14220]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17207]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
 
−
** '''86''' reactions found over '''182''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11081 P11081]
 +
** [http://www.uniprot.org/uniprot/P14671 P14671]
 +
** [http://www.uniprot.org/uniprot/P13228 P13228]
 +
** [http://www.uniprot.org/uniprot/P18284 P18284]
 +
** [http://www.uniprot.org/uniprot/P43759 P43759]
 +
** [http://www.uniprot.org/uniprot/O84172 O84172]
 +
** [http://www.uniprot.org/uniprot/P11080 P11080]
 +
** [http://www.uniprot.org/uniprot/P16608 P16608]
 +
** [http://www.uniprot.org/uniprot/P18285 P18285]
 +
** [http://www.uniprot.org/uniprot/P16706 P16706]
 +
** [http://www.uniprot.org/uniprot/P12290 P12290]
 +
** [http://www.uniprot.org/uniprot/P42391 P42391]
 +
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
 +
** [http://www.uniprot.org/uniprot/P12291 P12291]
 +
** [http://www.uniprot.org/uniprot/P42389 P42389]
 +
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
 +
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
 +
** [http://www.uniprot.org/uniprot/P07600 P07600]
 +
** [http://www.uniprot.org/uniprot/P07601 P07601]
 +
** [http://www.uniprot.org/uniprot/P06561 P06561]
 +
** [http://www.uniprot.org/uniprot/P56142 P56142]
 +
** [http://www.uniprot.org/uniprot/P06562 P06562]
 +
** [http://www.uniprot.org/uniprot/O27696 O27696]
 +
** [http://www.uniprot.org/uniprot/O28672 O28672]
 +
** [http://www.uniprot.org/uniprot/O66923 O66923]
 +
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 +
** [http://www.uniprot.org/uniprot/P43760 P43760]
 +
** [http://www.uniprot.org/uniprot/P34817 P34817]
 +
** [http://www.uniprot.org/uniprot/P34816 P34816]
 +
** [http://www.uniprot.org/uniprot/P17167 P17167]
 +
** [http://www.uniprot.org/uniprot/P17166 P17166]
 +
** [http://www.uniprot.org/uniprot/P19868 P19868]
 +
** [http://www.uniprot.org/uniprot/P19867 P19867]
 +
** [http://www.uniprot.org/uniprot/P16578 P16578]
 +
** [http://www.uniprot.org/uniprot/P43283 P43283]
 +
** [http://www.uniprot.org/uniprot/P43284 P43284]
 +
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 +
** [http://www.uniprot.org/uniprot/P31204 P31204]
 +
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 +
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 +
** [http://www.uniprot.org/uniprot/P34793 P34793]
 +
** [http://www.uniprot.org/uniprot/P42390 P42390]
 +
** [http://www.uniprot.org/uniprot/P50909 P50909]
 +
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 +
** [http://www.uniprot.org/uniprot/P51382 P51382]
 +
** [http://www.uniprot.org/uniprot/P77960 P77960]
 +
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 +
** [http://www.uniprot.org/uniprot/O22765 O22765]
 +
** [http://www.uniprot.org/uniprot/O04225 O04225]
 +
** [http://www.uniprot.org/uniprot/P25269 P25269]
 +
** [http://www.uniprot.org/uniprot/O64991 O64991]
 +
** [http://www.uniprot.org/uniprot/O05625 O05625]
 +
** [http://www.uniprot.org/uniprot/O13831 O13831]
 +
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 +
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 +
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 +
** [http://www.uniprot.org/uniprot/P00931 P00931]
 +
** [http://www.uniprot.org/uniprot/P00929 P00929]
 +
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 +
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trehalose-phosphatase}}
+
{{#set: common name=tryptophan_synthase_(alpha_beta_chains)}}
−
{{#set: ec number=EC-3.1.3.12}}
+
{{#set: ec number=EC-4.2.1.20}}
−
{{#set: gene associated=Tiso_gene_10840|Tiso_gene_14220}}
+
{{#set: gene associated=Tiso_gene_4604|Tiso_gene_17207}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|manual-primary_network|orthology-esiliculosus}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 17:55, 18 March 2018

Reaction TRYPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tryptophan_synthase_(alpha_beta_chains)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-serine[c] + 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] => 1 H2O[c] + 1 L-tryptophan[c] + 1 D-glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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